Magnesium in PDB 4rjl: Gamma Subunit of the Translation Initiation Factor 2 From Sulfolobus Solfataricus Complexed with Gdpcp

The structure of Gamma Subunit of the Translation Initiation Factor 2 From Sulfolobus Solfataricus Complexed with Gdpcp, PDB code: 4rjl was solved by O.V.Kravchenko, O.S.Nikonov, V.I.Arhipova, E.A.Stolboushkina, A.G.Gabdulkhakov, A.D.Nikulin, M.B.Garber, S.V.Nikonov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.56 / 1.64
Space group	I 2 3
Cell size a, b, c (Å), α, β, γ (°)	186.250, 186.250, 186.250, 90.00, 90.00, 90.00
R / Rfree (%)	16.8 / 18

The structure of Gamma Subunit of the Translation Initiation Factor 2 From Sulfolobus Solfataricus Complexed with Gdpcp also contains other interesting chemical elements:

Sodium

(Na)

2 atoms

The binding sites of Magnesium atom in the Gamma Subunit of the Translation Initiation Factor 2 From Sulfolobus Solfataricus Complexed with Gdpcp (pdb code 4rjl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Gamma Subunit of the Translation Initiation Factor 2 From Sulfolobus Solfataricus Complexed with Gdpcp, PDB code: 4rjl:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Gamma Subunit of the Translation Initiation Factor 2 From Sulfolobus Solfataricus Complexed with Gdpcp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Gamma Subunit of the Translation Initiation Factor 2 From Sulfolobus Solfataricus Complexed with Gdpcp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:5.6 occ:1.00 O3G A:GCP527 2.0 19.2 1.0 O2B A:GCP527 2.1 17.2 1.0 OG1 A:THR23 2.2 17.3 1.0 OG1 A:THR46 2.2 18.1 1.0 O A:HOH604 2.2 18.8 1.0 O A:HOH921 2.2 18.7 1.0 CB A:THR46 3.2 17.2 1.0 PG A:GCP527 3.3 16.9 1.0 CB A:THR23 3.3 16.8 1.0 PB A:GCP527 3.3 16.6 1.0 C3B A:GCP527 3.5 13.2 1.0 N A:THR23 3.9 14.8 1.0 N A:THR46 4.0 19.7 1.0 CA A:THR46 4.1 18.5 1.0 CA A:THR23 4.1 14.4 1.0 OD2 A:ASP93 4.2 18.9 1.0 O1B A:GCP527 4.2 15.5 1.0 CG2 A:THR46 4.2 18.7 1.0 O2G A:GCP527 4.3 18.4 1.0 O1G A:GCP527 4.3 16.1 1.0 O2A A:GCP527 4.3 18.6 1.0 OD1 A:ASP93 4.4 17.6 1.0 CG2 A:THR23 4.4 16.6 1.0 O A:HOH951 4.4 20.1 1.0 CE A:LYS22 4.5 16.1 1.0 O3A A:GCP527 4.5 15.8 1.0 O A:HOH1110 4.5 24.1 1.0 CB A:LYS22 4.6 13.0 1.0 O A:ALA94 4.6 17.0 1.0 CG A:ASP93 4.6 17.9 1.0 PA A:GCP527 4.8 16.9 1.0 C A:LYS22 4.9 15.2 1.0 C A:MET45 5.0 20.7 1.0 O1A A:GCP527 5.0 17.5 1.0

Magnesium binding site 2 out of 2 in the Gamma Subunit of the Translation Initiation Factor 2 From Sulfolobus Solfataricus Complexed with Gdpcp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Gamma Subunit of the Translation Initiation Factor 2 From Sulfolobus Solfataricus Complexed with Gdpcp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:19.5 occ:1.00 O A:VAL154 2.3 17.5 1.0 O A:VAL151 2.3 18.6 1.0 O A:HOH920 2.3 24.8 1.0 C A:VAL151 3.4 15.5 1.0 C A:VAL154 3.5 15.4 1.0 C A:SER155 4.0 21.1 1.0 CB A:VAL151 4.1 17.9 1.0 O A:SER155 4.2 20.4 1.0 N A:LYS156 4.2 19.4 1.0 CA A:VAL151 4.2 15.7 1.0 N A:ASP152 4.3 17.3 1.0 CA A:SER155 4.3 16.9 1.0 N A:SER155 4.3 16.7 1.0 N A:VAL154 4.4 16.2 1.0 CA A:ASP152 4.4 17.2 1.0 CA A:VAL154 4.5 16.6 1.0 CG2 A:VAL154 4.5 22.5 1.0 CG2 A:VAL151 4.5 19.2 1.0 C A:ASP152 4.6 19.8 1.0 CA A:LYS156 4.7 20.0 1.0 O A:ASP152 4.8 20.1 1.0 O A:HOH706 4.9 26.0 1.0

O.V.Kravchenko, O.S.Nikonov, V.I.Arhipova, E.A.Stolboushkina, A.G.Gabdulkhakov, A.D.Nikulin, M.B.Garber, S.V.Nikonov. Crystal Structure of Gamma Subunit of the Translation Initiation Factor 2 From Sulfolobus Solfataricus in Complex with Gdpcp at 1.64A Resolution To Be Published.