Magnesium in PDB 4rku: Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution

All present enzymatic activity of Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution:
1.97.1.12;

The structure of Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution, PDB code: 4rku was solved by Y.Mazor, A.Borovikova, I.Greenberg, N.Nelson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.69 / 3.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	120.631, 189.168, 129.667, 90.00, 91.11, 90.00
R / Rfree (%)	25.8 / 29.3

The structure of Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution also contains other interesting chemical elements:

Iron

(Fe)

12 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 158;

Binding sites:

The binding sites of Magnesium atom in the Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution (pdb code 4rku). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 158 binding sites of Magnesium where determined in the Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution, PDB code: 4rku:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 158 in the Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1101 b:75.4 occ:1.00 MG A:CLA1101 0.0 75.4 1.0 ND A:CLA1101 2.1 48.7 1.0 NB A:CLA1101 2.1 58.7 1.0 NC A:CLA1101 2.1 61.4 1.0 NA A:CLA1101 2.3 60.1 1.0 C4D A:CLA1101 3.0 48.1 1.0 C4B A:CLA1101 3.0 58.0 1.0 C1B A:CLA1101 3.1 56.4 1.0 C1C A:CLA1101 3.1 62.3 1.0 NE2 A:HIS58 3.1 61.5 1.0 C1D A:CLA1101 3.2 51.3 1.0 C4A A:CLA1101 3.2 66.7 1.0 C4C A:CLA1101 3.2 56.9 1.0 C1A A:CLA1101 3.2 55.9 1.0 CHC A:CLA1101 3.4 58.8 1.0 CHB A:CLA1101 3.5 62.3 1.0 CHA A:CLA1101 3.5 55.4 1.0 CHD A:CLA1101 3.6 52.7 1.0 CG J:PRO12 3.7 72.8 1.0 CD2 A:HIS58 4.0 62.4 1.0 CE1 A:HIS58 4.1 55.7 1.0 C3D A:CLA1101 4.2 47.5 1.0 C3B A:CLA1101 4.3 53.2 1.0 C2B A:CLA1101 4.4 53.9 1.0 C2C A:CLA1101 4.4 62.9 1.0 C2D A:CLA1101 4.4 43.9 1.0 C3C A:CLA1101 4.5 64.4 1.0 C3A A:CLA1101 4.6 69.0 1.0 C2A A:CLA1101 4.6 61.3 1.0 CB J:PRO12 4.6 73.9 1.0 CD J:PRO12 4.6 84.5 1.0

Magnesium binding site 2 out of 158 in the Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1102 b:65.3 occ:1.00 MG A:CLA1102 0.0 65.3 1.0 ND A:CLA1102 2.1 58.9 1.0 NB A:CLA1102 2.1 50.0 1.0 NC A:CLA1102 2.1 49.8 1.0 NA A:CLA1102 2.3 64.6 1.0 NE2 A:HIS62 3.0 83.6 1.0 C4D A:CLA1102 3.0 57.8 1.0 C4B A:CLA1102 3.0 55.2 1.0 C1B A:CLA1102 3.1 52.8 1.0 C1C A:CLA1102 3.1 51.3 1.0 C1D A:CLA1102 3.2 53.7 1.0 C4A A:CLA1102 3.2 67.1 1.0 C4C A:CLA1102 3.2 49.2 1.0 C1A A:CLA1102 3.2 66.3 1.0 CHC A:CLA1102 3.4 50.0 1.0 CHB A:CLA1102 3.4 59.9 1.0 CHA A:CLA1102 3.6 64.4 1.0 CHD A:CLA1102 3.6 46.4 1.0 CD2 A:HIS62 3.8 83.6 1.0 CE1 A:HIS62 3.9 84.3 1.0 C7 A:CLA1109 4.1 97.9 1.0 C3D A:CLA1102 4.2 55.2 1.0 C3B A:CLA1102 4.3 57.3 1.0 C2B A:CLA1102 4.4 56.3 1.0 C2D A:CLA1102 4.4 51.5 1.0 C2C A:CLA1102 4.4 44.1 1.0 C3C A:CLA1102 4.5 56.8 1.0 C3A A:CLA1102 4.6 68.5 1.0 C2A A:CLA1102 4.6 71.6 1.0 C6 A:CLA1109 4.8 95.7 1.0 C10 A:CLA1109 4.9 97.6 1.0 CBB A:CLA1103 4.9 81.9 1.0 CG A:HIS62 5.0 84.6 1.0 CAB A:CLA1101 5.0 52.3 1.0 ND1 A:HIS62 5.0 81.8 1.0

Magnesium binding site 3 out of 158 in the Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1103 b:0.5 occ:1.00 MG A:CLA1103 0.0 0.5 1.0 ND A:CLA1103 2.1 82.1 1.0 NB A:CLA1103 2.1 77.8 1.0 NC A:CLA1103 2.1 71.8 1.0 NA A:CLA1103 2.3 75.6 1.0 CMB A:CLA1128 2.6 73.2 1.0 NE2 A:HIS82 2.9 79.2 1.0 C4D A:CLA1103 3.0 82.2 1.0 C4B A:CLA1103 3.0 79.2 1.0 C1B A:CLA1103 3.1 77.8 1.0 C1C A:CLA1103 3.1 76.3 1.0 C1D A:CLA1103 3.2 78.9 1.0 C4A A:CLA1103 3.2 73.2 1.0 C4C A:CLA1103 3.2 75.3 1.0 C1A A:CLA1103 3.2 79.5 1.0 CHC A:CLA1103 3.4 74.3 1.0 CHB A:CLA1103 3.4 75.5 1.0 CD2 A:HIS82 3.5 83.6 1.0 CHA A:CLA1103 3.5 82.2 1.0 CHD A:CLA1103 3.6 77.4 1.0 CE1 A:HIS82 4.0 81.8 1.0 C2B A:CLA1128 4.1 69.3 1.0 C3D A:CLA1103 4.2 81.3 1.0 C3B A:CLA1103 4.3 81.0 1.0 C2B A:CLA1103 4.4 80.0 1.0 C2C A:CLA1103 4.4 72.5 1.0 C2D A:CLA1103 4.4 80.8 1.0 C3C A:CLA1103 4.5 72.7 1.0 C3A A:CLA1103 4.5 70.9 1.0 C2A A:CLA1103 4.6 70.0 1.0 CG A:HIS82 4.7 82.8 1.0 CG2 A:VAL78 4.7 93.0 1.0 ND1 A:HIS82 4.9 84.2 1.0 C3B A:CLA1128 5.0 69.9 1.0 CAB A:CLA1128 5.0 77.0 1.0

Magnesium binding site 4 out of 158 in the Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1104 b:84.3 occ:1.00 MG A:CLA1104 0.0 84.3 1.0 ND A:CLA1104 2.1 65.2 1.0 NB A:CLA1104 2.1 64.4 1.0 NC A:CLA1104 2.1 72.8 1.0 NA A:CLA1104 2.3 73.0 1.0 OE1 A:GLN85 2.9 60.4 1.0 C4D A:CLA1104 3.0 68.7 1.0 C4B A:CLA1104 3.0 69.5 1.0 C1B A:CLA1104 3.1 67.6 1.0 C1C A:CLA1104 3.1 67.3 1.0 C1D A:CLA1104 3.2 69.7 1.0 C4C A:CLA1104 3.2 69.9 1.0 C4A A:CLA1104 3.2 66.4 1.0 C1A A:CLA1104 3.2 70.7 1.0 CHC A:CLA1104 3.3 69.3 1.0 C17 A:CLA1104 3.4 78.6 1.0 CHB A:CLA1104 3.5 69.9 1.0 CHA A:CLA1104 3.5 74.9 1.0 CHD A:CLA1104 3.6 67.5 1.0 CD A:GLN85 3.8 58.9 1.0 C15 A:CLA1104 3.9 80.7 1.0 NE2 A:GLN85 4.0 61.9 1.0 C16 A:CLA1104 4.1 81.7 1.0 C3D A:CLA1104 4.2 68.3 1.0 C3B A:CLA1104 4.3 66.7 1.0 C2B A:CLA1104 4.4 61.3 1.0 C2C A:CLA1104 4.4 68.3 1.0 C2D A:CLA1104 4.4 68.8 1.0 C3C A:CLA1104 4.5 72.6 1.0 C3A A:CLA1104 4.6 74.8 1.0 C2A A:CLA1104 4.6 70.7 1.0 C18 A:CLA1104 4.6 73.7 1.0 C13 A:CLA1104 4.9 80.3 1.0 CMA A:CLA1103 5.0 64.0 1.0

Magnesium binding site 5 out of 158 in the Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1105 b:71.6 occ:1.00 MG A:CLA1105 0.0 71.6 1.0 NB A:CLA1105 2.1 80.7 1.0 ND A:CLA1105 2.1 84.0 1.0 NC A:CLA1105 2.1 73.6 1.0 NA A:CLA1105 2.3 79.7 1.0 NE2 A:HIS99 2.9 62.9 1.0 C4D A:CLA1105 3.0 82.0 1.0 C4B A:CLA1105 3.0 81.5 1.0 C1B A:CLA1105 3.1 79.7 1.0 C1C A:CLA1105 3.1 73.6 1.0 C1D A:CLA1105 3.2 80.8 1.0 C4C A:CLA1105 3.2 78.0 1.0 C4A A:CLA1105 3.2 77.8 1.0 C1A A:CLA1105 3.2 81.8 1.0 CHC A:CLA1105 3.4 79.3 1.0 CHB A:CLA1105 3.5 78.3 1.0 CD2 A:HIS99 3.5 61.5 1.0 CHA A:CLA1105 3.5 82.4 1.0 CHD A:CLA1105 3.6 79.8 1.0 CE1 A:HIS99 4.1 69.5 1.0 C3D A:CLA1105 4.2 82.9 1.0 C3B A:CLA1105 4.3 84.1 1.0 C2B A:CLA1105 4.4 83.7 1.0 C2D A:CLA1105 4.4 82.6 1.0 C2C A:CLA1105 4.4 68.8 1.0 C3C A:CLA1105 4.5 77.8 1.0 C3A A:CLA1105 4.6 75.7 1.0 C2A A:CLA1105 4.6 83.5 1.0 CG A:HIS99 4.8 68.8 1.0

Magnesium binding site 6 out of 158 in the Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1106 b:52.2 occ:1.00 MG A:CLA1106 0.0 52.2 1.0 NB A:CLA1106 2.1 55.6 1.0 ND A:CLA1106 2.1 61.6 1.0 NC A:CLA1106 2.1 52.5 1.0 NA A:CLA1106 2.3 44.8 1.0 OE1 A:GLN121 3.0 82.0 1.0 C4D A:CLA1106 3.0 44.6 1.0 C4B A:CLA1106 3.0 53.6 1.0 C1B A:CLA1106 3.1 52.4 1.0 C1C A:CLA1106 3.1 41.4 1.0 C1D A:CLA1106 3.2 61.0 1.0 C4A A:CLA1106 3.2 51.2 1.0 C4C A:CLA1106 3.2 54.7 1.0 C1A A:CLA1106 3.2 52.0 1.0 CHC A:CLA1106 3.3 41.4 1.0 CHB A:CLA1106 3.4 48.6 1.0 CHA A:CLA1106 3.6 45.5 1.0 CHD A:CLA1106 3.6 58.2 1.0 CD A:GLN121 3.8 80.5 1.0 NE2 A:GLN121 3.8 80.4 1.0 C3D A:CLA1106 4.2 44.8 1.0 C2 A:CLA1126 4.2 76.0 1.0 C3B A:CLA1106 4.3 42.3 1.0 C2B A:CLA1106 4.4 49.1 1.0 C2D A:CLA1106 4.4 52.9 1.0 C2C A:CLA1106 4.4 56.3 1.0 C3C A:CLA1106 4.5 58.5 1.0 C3A A:CLA1106 4.6 54.7 1.0 C2A A:CLA1106 4.6 59.1 1.0 C5 A:CLA1126 4.6 73.0 1.0 O1A A:CLA1126 4.6 93.9 1.0 C3 A:CLA1126 4.9 72.5 1.0

Magnesium binding site 7 out of 158 in the Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1107 b:87.6 occ:1.00 MG A:CLA1107 0.0 87.6 1.0 NB A:CLA1107 2.0 68.2 1.0 ND A:CLA1107 2.1 75.6 1.0 NC A:CLA1107 2.1 83.6 1.0 NA A:CLA1107 2.3 62.2 1.0 OE1 A:GLN129 2.9 66.4 1.0 C4D A:CLA1107 3.0 70.0 1.0 C4B A:CLA1107 3.0 74.7 1.0 C1B A:CLA1107 3.1 69.0 1.0 C1C A:CLA1107 3.1 87.1 1.0 C1D A:CLA1107 3.2 78.8 1.0 C4A A:CLA1107 3.2 65.2 1.0 C4C A:CLA1107 3.2 81.7 1.0 C1A A:CLA1107 3.2 61.9 1.0 CHC A:CLA1107 3.3 82.4 1.0 CHB A:CLA1107 3.4 64.7 1.0 CHA A:CLA1107 3.5 66.1 1.0 CHD A:CLA1107 3.6 78.3 1.0 C35 J:BCR6012 3.6 97.5 1.0 CD A:GLN129 4.1 72.6 1.0 C18 A:CLA1126 4.2 93.9 1.0 C3D A:CLA1107 4.2 72.1 1.0 C3B A:CLA1107 4.3 79.5 1.0 C2B A:CLA1107 4.4 73.3 1.0 C2C A:CLA1107 4.4 95.3 1.0 C2D A:CLA1107 4.4 84.0 1.0 C3C A:CLA1107 4.5 88.0 1.0 C14 A:CLA1126 4.5 93.5 1.0 C16 A:CLA1126 4.5 0.7 1.0 C3A A:CLA1107 4.6 64.4 1.0 C2A A:CLA1107 4.6 63.4 1.0 CG A:GLN129 4.6 41.2 1.0 C20 A:CLA1126 4.7 91.9 1.0 C17 A:CLA1126 4.8 0.1 1.0 C13 J:BCR6012 5.0 95.2 1.0

Magnesium binding site 8 out of 158 in the Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1108 b:0.1 occ:1.00 MG A:CLA1108 0.0 0.1 1.0 NB A:CLA1108 2.1 0.1 1.0 ND A:CLA1108 2.1 0.0 1.0 NC A:CLA1108 2.1 0.7 1.0 NA A:CLA1108 2.3 0.3 1.0 C4D A:CLA1108 3.0 0.8 1.0 C4B A:CLA1108 3.0 0.7 1.0 C1B A:CLA1108 3.1 0.4 1.0 NE2 A:HIS185 3.1 0.7 1.0 C1C A:CLA1108 3.1 1.0 1.0 C1D A:CLA1108 3.2 0.1 1.0 C4A A:CLA1108 3.2 0.5 1.0 C4C A:CLA1108 3.2 0.5 1.0 C1A A:CLA1108 3.2 0.5 1.0 CHC A:CLA1108 3.4 0.3 1.0 CHB A:CLA1108 3.5 0.9 1.0 CHA A:CLA1108 3.5 0.1 1.0 CE1 A:HIS185 3.5 0.3 1.0 CHD A:CLA1108 3.6 0.5 1.0 CD2 A:HIS185 4.1 0.2 1.0 C3D A:CLA1108 4.2 0.5 1.0 C3B A:CLA1108 4.3 0.8 1.0 C2B A:CLA1108 4.4 0.6 1.0 C2D A:CLA1108 4.4 0.5 1.0 C2C A:CLA1108 4.4 0.8 1.0 C3C A:CLA1108 4.5 0.7 1.0 C3A A:CLA1108 4.6 0.1 1.0 C2A A:CLA1108 4.6 0.4 1.0 ND1 A:HIS185 4.6 0.4 1.0 CG A:HIS185 5.0 0.1 1.0

Magnesium binding site 9 out of 158 in the Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1109 b:0.5 occ:1.00 MG A:CLA1109 0.0 0.5 1.0 ND A:CLA1109 2.1 0.9 1.0 NB A:CLA1109 2.1 0.3 1.0 NC A:CLA1109 2.1 0.8 1.0 NA A:CLA1109 2.3 0.8 1.0 C4D A:CLA1109 3.0 0.1 1.0 C4B A:CLA1109 3.0 1.0 1.0 C1B A:CLA1109 3.1 0.8 1.0 C1C A:CLA1109 3.1 0.7 1.0 O2A A:CLA1102 3.1 93.5 1.0 CE1 A:HIS187 3.1 89.3 1.0 C1D A:CLA1109 3.2 0.3 1.0 C4A A:CLA1109 3.2 0.2 1.0 C4C A:CLA1109 3.2 0.5 1.0 C1A A:CLA1109 3.2 0.5 1.0 CHC A:CLA1109 3.3 0.9 1.0 CHB A:CLA1109 3.5 0.1 1.0 CHA A:CLA1109 3.5 0.2 1.0 CHD A:CLA1109 3.6 0.8 1.0 CGA A:CLA1102 3.8 92.9 1.0 NE2 A:HIS187 4.0 91.9 1.0 ND1 A:HIS187 4.1 94.6 1.0 O1A A:CLA1102 4.1 95.6 1.0 C3D A:CLA1109 4.2 0.2 1.0 C3B A:CLA1109 4.3 1.0 1.0 C1 A:CLA1102 4.3 87.9 1.0 C2B A:CLA1109 4.4 0.6 1.0 C2C A:CLA1109 4.4 0.3 1.0 C2D A:CLA1109 4.4 0.1 1.0 C3C A:CLA1109 4.5 0.7 1.0 C3A A:CLA1109 4.6 0.2 1.0 C2A A:CLA1109 4.6 0.5 1.0 CBA A:CLA1102 4.6 85.6 1.0

Magnesium binding site 10 out of 158 in the Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Crystal Structure of Plant Photosystem I at 3 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1110 b:0.1 occ:1.00 MG A:CLA1110 0.0 0.1 1.0 ND A:CLA1110 2.1 0.6 1.0 NB A:CLA1110 2.1 0.2 1.0 NC A:CLA1110 2.1 0.2 1.0 NA A:CLA1110 2.3 0.1 1.0 C4D A:CLA1110 3.0 0.8 1.0 C4B A:CLA1110 3.0 0.2 1.0 C1B A:CLA1110 3.1 0.8 1.0 C1C A:CLA1110 3.1 0.7 1.0 C1D A:CLA1110 3.2 0.2 1.0 C4A A:CLA1110 3.2 0.2 1.0 C4C A:CLA1110 3.2 0.8 1.0 C1A A:CLA1110 3.2 0.4 1.0 CHC A:CLA1110 3.4 0.6 1.0 CHB A:CLA1110 3.4 0.1 1.0 CHA A:CLA1110 3.5 0.5 1.0 CHD A:CLA1110 3.6 0.5 1.0 NE2 A:HIS205 3.9 95.5 1.0 CMC A:CLA1111 4.0 86.9 1.0 C3D A:CLA1110 4.2 0.7 1.0 CD2 A:HIS205 4.2 97.7 1.0 C3B A:CLA1110 4.3 0.2 1.0 C2B A:CLA1110 4.4 0.2 1.0 C2C A:CLA1110 4.4 0.4 1.0 C2D A:CLA1110 4.4 0.4 1.0 C3C A:CLA1110 4.5 0.4 1.0 C3A A:CLA1110 4.5 0.1 1.0 C2A A:CLA1110 4.6 0.9 1.0 C1 A:CLA1108 4.7 0.7 1.0 CE1 A:HIS205 4.8 96.5 1.0

Y.Mazor, A.Borovikova, I.Greenberg, N.Nelson. Crystal Structure of Plant Photosystem I at 3.1 Angstrom Resolution To Be Published.