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Magnesium in PDB 4rn3: Crystal Structure of A Had-Superfamily Hydrolase, Subfamily Ia, Variant 1 (GSU2069) From Geobacter Sulfurreducens Pca at 2.15 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Had-Superfamily Hydrolase, Subfamily Ia, Variant 1 (GSU2069) From Geobacter Sulfurreducens Pca at 2.15 A Resolution, PDB code: 4rn3 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.96 / 2.15
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 58.469, 190.593, 40.866, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 21.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Had-Superfamily Hydrolase, Subfamily Ia, Variant 1 (GSU2069) From Geobacter Sulfurreducens Pca at 2.15 A Resolution (pdb code 4rn3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Had-Superfamily Hydrolase, Subfamily Ia, Variant 1 (GSU2069) From Geobacter Sulfurreducens Pca at 2.15 A Resolution, PDB code: 4rn3:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4rn3

Go back to Magnesium Binding Sites List in 4rn3
Magnesium binding site 1 out of 2 in the Crystal Structure of A Had-Superfamily Hydrolase, Subfamily Ia, Variant 1 (GSU2069) From Geobacter Sulfurreducens Pca at 2.15 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Had-Superfamily Hydrolase, Subfamily Ia, Variant 1 (GSU2069) From Geobacter Sulfurreducens Pca at 2.15 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:27.2
occ:1.00
O A:HOH452 1.9 26.6 1.0
OD1 A:ASP173 1.9 35.2 1.0
OD2 A:ASP16 2.0 32.8 1.0
O A:ASP18 2.0 23.2 1.0
O A:HOH442 2.0 28.3 1.0
O A:HOH453 2.3 26.7 1.0
CG A:ASP173 3.0 33.2 1.0
CG A:ASP16 3.1 27.6 1.0
C A:ASP18 3.2 24.0 1.0
OD2 A:ASP173 3.3 38.8 1.0
OD1 A:ASP16 3.6 28.4 1.0
OD2 A:ASP177 3.7 24.7 1.0
OG A:SER174 3.8 40.0 1.0
CA A:ASP18 4.1 22.0 1.0
N A:ASP18 4.2 22.5 1.0
O A:HOH493 4.2 39.9 1.0
N A:GLY19 4.2 20.9 1.0
CB A:ASP18 4.2 24.1 1.0
CB A:ASP173 4.3 23.9 1.0
CB A:ASP16 4.3 22.4 1.0
N A:ASP173 4.4 21.0 1.0
CA A:GLY19 4.4 21.2 1.0
CG2 A:VAL20 4.5 21.8 1.0
CB A:SER174 4.7 27.6 1.0
N A:SER174 4.7 23.1 1.0
CG A:ASP177 4.7 28.4 1.0
CA A:ASP173 4.8 22.1 1.0
C A:CYS17 4.8 26.4 1.0
N A:VAL20 4.8 20.2 1.0
C A:GLY19 4.8 24.5 1.0
OD1 A:ASP177 4.9 30.1 1.0
C A:ASP173 4.9 26.1 1.0

Magnesium binding site 2 out of 2 in 4rn3

Go back to Magnesium Binding Sites List in 4rn3
Magnesium binding site 2 out of 2 in the Crystal Structure of A Had-Superfamily Hydrolase, Subfamily Ia, Variant 1 (GSU2069) From Geobacter Sulfurreducens Pca at 2.15 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Had-Superfamily Hydrolase, Subfamily Ia, Variant 1 (GSU2069) From Geobacter Sulfurreducens Pca at 2.15 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg301

b:52.0
occ:1.00
O B:HOH422 2.0 64.1 1.0
OD1 B:ASP173 2.1 59.1 1.0
OG B:SER174 2.7 72.4 1.0
OD2 B:ASP16 2.8 62.1 1.0
O B:ASP18 3.0 46.8 1.0
O B:HOH423 3.1 55.4 1.0
CG B:ASP173 3.1 60.6 1.0
OD2 B:ASP177 3.4 67.2 1.0
OD2 B:ASP173 3.5 64.6 1.0
CB B:SER174 3.6 62.0 1.0
CG B:ASP16 3.8 58.1 1.0
N B:SER174 4.1 60.6 1.0
OD1 B:ASP16 4.1 58.2 1.0
C B:ASP18 4.2 47.2 1.0
CG B:ASP177 4.3 64.1 1.0
CB B:ASP173 4.5 56.9 1.0
CA B:SER174 4.5 61.5 1.0
N B:ASP173 4.5 55.7 1.0
OD1 B:ASP177 4.5 63.3 1.0
C B:ASP173 4.5 63.8 1.0
CA B:ASP173 4.7 57.6 1.0
CB B:ASP18 4.8 45.3 1.0
O B:HOH421 4.9 37.8 1.0
CA B:ASP18 4.9 42.4 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Tue Aug 20 03:13:39 2024

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