Atomistry » Magnesium » PDB 4rkf-4rrh » 4rn3
Atomistry »
  Magnesium »
    PDB 4rkf-4rrh »
      4rn3 »

Magnesium in PDB 4rn3: Crystal Structure of A Had-Superfamily Hydrolase, Subfamily Ia, Variant 1 (GSU2069) From Geobacter Sulfurreducens Pca at 2.15 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Had-Superfamily Hydrolase, Subfamily Ia, Variant 1 (GSU2069) From Geobacter Sulfurreducens Pca at 2.15 A Resolution, PDB code: 4rn3 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.96 / 2.15
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 58.469, 190.593, 40.866, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 21.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Had-Superfamily Hydrolase, Subfamily Ia, Variant 1 (GSU2069) From Geobacter Sulfurreducens Pca at 2.15 A Resolution (pdb code 4rn3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Had-Superfamily Hydrolase, Subfamily Ia, Variant 1 (GSU2069) From Geobacter Sulfurreducens Pca at 2.15 A Resolution, PDB code: 4rn3:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4rn3

Go back to Magnesium Binding Sites List in 4rn3
Magnesium binding site 1 out of 2 in the Crystal Structure of A Had-Superfamily Hydrolase, Subfamily Ia, Variant 1 (GSU2069) From Geobacter Sulfurreducens Pca at 2.15 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Had-Superfamily Hydrolase, Subfamily Ia, Variant 1 (GSU2069) From Geobacter Sulfurreducens Pca at 2.15 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:27.2
occ:1.00
O A:HOH452 1.9 26.6 1.0
OD1 A:ASP173 1.9 35.2 1.0
OD2 A:ASP16 2.0 32.8 1.0
O A:ASP18 2.0 23.2 1.0
O A:HOH442 2.0 28.3 1.0
O A:HOH453 2.3 26.7 1.0
CG A:ASP173 3.0 33.2 1.0
CG A:ASP16 3.1 27.6 1.0
C A:ASP18 3.2 24.0 1.0
OD2 A:ASP173 3.3 38.8 1.0
OD1 A:ASP16 3.6 28.4 1.0
OD2 A:ASP177 3.7 24.7 1.0
OG A:SER174 3.8 40.0 1.0
CA A:ASP18 4.1 22.0 1.0
N A:ASP18 4.2 22.5 1.0
O A:HOH493 4.2 39.9 1.0
N A:GLY19 4.2 20.9 1.0
CB A:ASP18 4.2 24.1 1.0
CB A:ASP173 4.3 23.9 1.0
CB A:ASP16 4.3 22.4 1.0
N A:ASP173 4.4 21.0 1.0
CA A:GLY19 4.4 21.2 1.0
CG2 A:VAL20 4.5 21.8 1.0
CB A:SER174 4.7 27.6 1.0
N A:SER174 4.7 23.1 1.0
CG A:ASP177 4.7 28.4 1.0
CA A:ASP173 4.8 22.1 1.0
C A:CYS17 4.8 26.4 1.0
N A:VAL20 4.8 20.2 1.0
C A:GLY19 4.8 24.5 1.0
OD1 A:ASP177 4.9 30.1 1.0
C A:ASP173 4.9 26.1 1.0

Magnesium binding site 2 out of 2 in 4rn3

Go back to Magnesium Binding Sites List in 4rn3
Magnesium binding site 2 out of 2 in the Crystal Structure of A Had-Superfamily Hydrolase, Subfamily Ia, Variant 1 (GSU2069) From Geobacter Sulfurreducens Pca at 2.15 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Had-Superfamily Hydrolase, Subfamily Ia, Variant 1 (GSU2069) From Geobacter Sulfurreducens Pca at 2.15 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg301

b:52.0
occ:1.00
O B:HOH422 2.0 64.1 1.0
OD1 B:ASP173 2.1 59.1 1.0
OG B:SER174 2.7 72.4 1.0
OD2 B:ASP16 2.8 62.1 1.0
O B:ASP18 3.0 46.8 1.0
O B:HOH423 3.1 55.4 1.0
CG B:ASP173 3.1 60.6 1.0
OD2 B:ASP177 3.4 67.2 1.0
OD2 B:ASP173 3.5 64.6 1.0
CB B:SER174 3.6 62.0 1.0
CG B:ASP16 3.8 58.1 1.0
N B:SER174 4.1 60.6 1.0
OD1 B:ASP16 4.1 58.2 1.0
C B:ASP18 4.2 47.2 1.0
CG B:ASP177 4.3 64.1 1.0
CB B:ASP173 4.5 56.9 1.0
CA B:SER174 4.5 61.5 1.0
N B:ASP173 4.5 55.7 1.0
OD1 B:ASP177 4.5 63.3 1.0
C B:ASP173 4.5 63.8 1.0
CA B:ASP173 4.7 57.6 1.0
CB B:ASP18 4.8 45.3 1.0
O B:HOH421 4.9 37.8 1.0
CA B:ASP18 4.9 42.4 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Tue Aug 20 03:13:39 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy