Magnesium in PDB 4rnk: Sequence and Structure of A Self-Assembled 3-D Dna Crystal: D(Ggaaaatttggag)

The structure of Sequence and Structure of A Self-Assembled 3-D Dna Crystal: D(Ggaaaatttggag), PDB code: 4rnk was solved by M.M.Saoji, P.J.Paukstelis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.41 / 2.08
Space group	P 64
Cell size a, b, c (Å), α, β, γ (°)	39.729, 39.729, 55.989, 90.00, 90.00, 120.00
R / Rfree (%)	20.1 / 23.9

The binding sites of Magnesium atom in the Sequence and Structure of A Self-Assembled 3-D Dna Crystal: D(Ggaaaatttggag) (pdb code 4rnk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Sequence and Structure of A Self-Assembled 3-D Dna Crystal: D(Ggaaaatttggag), PDB code: 4rnk:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Sequence and Structure of A Self-Assembled 3-D Dna Crystal: D(Ggaaaatttggag)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Sequence and Structure of A Self-Assembled 3-D Dna Crystal: D(Ggaaaatttggag) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg101 b:74.0 occ:1.00 O A:HOH207 1.9 58.8 1.0 O A:HOH206 2.1 77.0 1.0 OP1 A:DA3 4.0 55.2 1.0 OP2 A:DA3 4.1 54.1 1.0 P A:DA3 4.6 52.6 1.0 C3' A:DG2 5.0 50.3 1.0

Magnesium binding site 2 out of 2 in the Sequence and Structure of A Self-Assembled 3-D Dna Crystal: D(Ggaaaatttggag)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Sequence and Structure of A Self-Assembled 3-D Dna Crystal: D(Ggaaaatttggag) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg102 b:62.9 occ:1.00 O A:HOH209 2.5 50.5 1.0 C5' A:DA3 3.7 51.4 1.0 O4' A:DA3 3.9 47.6 1.0 C4' A:DG2 4.0 51.3 1.0 O4' A:DG2 4.1 48.6 1.0 C4' A:DA3 4.1 49.9 1.0 O3' A:DG2 4.3 51.8 1.0 O5' A:DA3 4.7 52.0 1.0 C1' A:DG2 4.7 47.2 1.0 C5' A:DG2 4.8 55.3 1.0 C3' A:DG2 4.9 50.3 1.0

M.Saoji, D.Zhang, P.J.Paukstelis. Probing the Role of Sequence in the Assembly of Three-Dimensional Dna Crystals. Biopolymers V. 103 618 2015.
ISSN: ISSN 0006-3525
PubMed: 26015367
DOI: 10.1002/BIP.22688