Magnesium in PDB 4ro8: Sequence and Structure of A Self-Assembled 3-D Dna Crystal: D(Ggaatcgatggag)

The structure of Sequence and Structure of A Self-Assembled 3-D Dna Crystal: D(Ggaatcgatggag), PDB code: 4ro8 was solved by M.M.Saoji, P.J.Paukstelis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.84 / 2.08
Space group	P 64
Cell size a, b, c (Å), α, β, γ (°)	40.232, 40.232, 52.910, 90.00, 90.00, 120.00
R / Rfree (%)	22.5 / 26.6

The binding sites of Magnesium atom in the Sequence and Structure of A Self-Assembled 3-D Dna Crystal: D(Ggaatcgatggag) (pdb code 4ro8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Sequence and Structure of A Self-Assembled 3-D Dna Crystal: D(Ggaatcgatggag), PDB code: 4ro8:

Magnesium binding site 1 out of 1 in the Sequence and Structure of A Self-Assembled 3-D Dna Crystal: D(Ggaatcgatggag)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Sequence and Structure of A Self-Assembled 3-D Dna Crystal: D(Ggaatcgatggag) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg101 b:84.3 occ:1.00 O A:HOH201 2.1 74.2 1.0 O A:HOH204 2.2 65.1 1.0 O A:HOH203 2.3 68.9 1.0 O A:HOH202 2.4 67.0 1.0 OP2 A:DA3 3.5 72.4 1.0 OP1 A:DA3 3.6 74.0 1.0 P A:DA3 4.0 70.3 1.0 C3' A:DG2 4.7 66.8 1.0 O3' A:DG2 4.8 66.2 1.0

M.Saoji, D.Zhang, P.J.Paukstelis. Probing the Role of Sequence in the Assembly of Three-Dimensional Dna Crystals. Biopolymers V. 103 618 2015.
ISSN: ISSN 0006-3525
PubMed: 26015367
DOI: 10.1002/BIP.22688