Atomistry » Magnesium » PDB 4rri-4s1k » 4rus
Atomistry »
  Magnesium »
    PDB 4rri-4s1k »
      4rus »

Magnesium in PDB 4rus: Carp Fishelectin, Holo Form

Protein crystallography data

The structure of Carp Fishelectin, Holo Form, PDB code: 4rus was solved by S.Capaldi, B.Faggion, M.E.Carrizo, L.Destefanis, M.C.Gonzalez, M.Perduca, M.Bovi, M.Galliano, H.L.Monaco, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.67 / 1.70
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 204.410, 120.810, 69.270, 90.00, 91.42, 90.00
R / Rfree (%) 19.5 / 21.4

Other elements in 4rus:

The structure of Carp Fishelectin, Holo Form also contains other interesting chemical elements:

Calcium (Ca) 6 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Carp Fishelectin, Holo Form (pdb code 4rus). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Carp Fishelectin, Holo Form, PDB code: 4rus:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 4rus

Go back to Magnesium Binding Sites List in 4rus
Magnesium binding site 1 out of 4 in the Carp Fishelectin, Holo Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Carp Fishelectin, Holo Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg306

b:7.4
occ:1.00
OD1 A:ASP7 2.2 15.6 1.0
OD1 E:ASP7 2.2 15.8 1.0
OD1 D:ASP7 2.2 16.1 1.0
O E:HOH418 2.2 14.9 1.0
O A:HOH462 2.3 19.2 1.0
O D:HOH439 2.4 19.4 1.0
CG A:ASP7 3.3 15.2 1.0
CG E:ASP7 3.3 15.1 1.0
CG D:ASP7 3.3 15.5 1.0
CB E:ASP7 3.8 14.1 1.0
CB A:ASP7 3.8 14.4 1.0
CB D:ASP7 3.9 14.6 1.0
O E:HOH431 4.1 16.5 1.0
O E:HOH433 4.1 16.3 1.0
O A:HOH489 4.2 18.6 1.0
CA E:ASP7 4.2 13.4 1.0
CA A:ASP7 4.3 13.7 1.0
CA D:ASP7 4.3 13.8 1.0
OD2 A:ASP7 4.4 15.6 1.0
OD2 E:ASP7 4.4 15.6 1.0
OD2 D:ASP7 4.4 16.1 1.0
O E:HOH457 4.5 18.5 1.0
O D:HOH444 4.5 16.0 1.0
N E:GLY8 4.7 12.7 1.0
O E:HOH520 4.7 19.8 1.0
N D:GLY8 4.7 13.2 1.0
N A:GLY8 4.8 13.1 1.0
C E:ASP7 5.0 12.8 1.0

Magnesium binding site 2 out of 4 in 4rus

Go back to Magnesium Binding Sites List in 4rus
Magnesium binding site 2 out of 4 in the Carp Fishelectin, Holo Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Carp Fishelectin, Holo Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg307

b:35.1
occ:1.00
OD2 A:ASP86 1.8 15.2 1.0
OD2 B:ASP86 2.0 13.1 1.0
O B:HOH522 2.1 21.7 1.0
O A:HOH565 2.2 24.0 1.0
CG A:ASP86 2.6 13.4 1.0
CG B:ASP86 2.7 12.0 1.0
OD1 A:ASP86 2.8 13.3 1.0
OD1 B:ASP86 2.9 11.8 1.0
OG A:SER150 3.0 16.2 1.0
OG B:SER150 3.3 12.0 1.0
O A:HOH463 3.8 14.9 1.0
O B:HOH443 3.8 13.6 1.0
CB A:ASP86 4.0 12.2 1.0
CB B:ASP86 4.2 11.4 1.0
CB A:SER150 4.2 15.3 1.0
CB B:SER150 4.6 11.8 1.0
O A:ASP86 4.6 11.1 1.0
O B:ASP86 4.8 10.5 1.0
SD A:MET103 5.0 19.6 1.0

Magnesium binding site 3 out of 4 in 4rus

Go back to Magnesium Binding Sites List in 4rus
Magnesium binding site 3 out of 4 in the Carp Fishelectin, Holo Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Carp Fishelectin, Holo Form within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg306

b:23.4
occ:1.00
OD2 D:ASP86 1.9 21.7 1.0
OD2 C:ASP86 2.1 21.9 1.0
O D:HOH524 2.1 27.9 1.0
O C:HOH507 2.3 30.5 1.0
CG D:ASP86 2.5 20.4 1.0
OD1 D:ASP86 2.6 20.2 1.0
OD1 C:ASP86 2.7 20.3 1.0
CG C:ASP86 2.7 20.1 1.0
OG D:SER150 3.1 26.5 1.0
OG C:SER150 3.4 24.9 1.0
CB D:ASP86 4.0 19.4 1.0
O C:HOH494 4.0 22.3 1.0
CB C:ASP86 4.2 19.1 1.0
CB D:SER150 4.3 26.5 1.0
O D:ASP86 4.5 18.5 1.0
CB C:SER150 4.5 24.0 1.0
O C:ASP86 4.7 17.4 1.0
CA D:ASP86 4.9 18.0 1.0
C D:ASP86 4.9 17.7 1.0

Magnesium binding site 4 out of 4 in 4rus

Go back to Magnesium Binding Sites List in 4rus
Magnesium binding site 4 out of 4 in the Carp Fishelectin, Holo Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Carp Fishelectin, Holo Form within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg306

b:16.6
occ:1.00
OD2 F:ASP86 2.0 21.3 1.0
OD2 E:ASP86 2.2 21.5 1.0
O E:HOH514 2.3 23.9 1.0
O F:HOH427 2.4 23.4 1.0
OD1 F:ASP86 2.5 20.2 1.0
OD1 E:ASP86 2.5 19.9 1.0
CG F:ASP86 2.6 20.0 1.0
O E:HOH519 2.6 25.6 1.0
CG E:ASP86 2.7 20.2 1.0
CB F:ASP86 4.1 19.2 1.0
CB E:ASP86 4.2 19.2 1.0
O E:HOH501 4.4 25.1 1.0
OG F:SER150 4.5 25.0 1.0
CB F:SER150 4.5 24.2 1.0
O F:ASP86 4.5 17.3 1.0
CB E:SER150 4.5 25.2 1.0
OG E:SER150 4.5 26.2 1.0
O E:ASP86 4.6 19.0 1.0
C F:ASP86 4.9 17.3 1.0
NE2 E:GLN87 4.9 19.3 1.0
NE2 F:GLN87 5.0 17.3 1.0
CA F:ASP86 5.0 17.9 1.0

Reference:

S.Capaldi, B.Faggion, M.E.Carrizo, L.Destefanis, M.C.Gonzalez, M.Perduca, M.Bovi, M.Galliano, H.L.Monaco. Three Dimensional Structure and Ligand-Binding Site of Carp Fishelectin (Fel) Acta Crystallogr.,Sect.D V. 71 2015.
ISSN: ESSN 1399-0047
DOI: 10.1107/S1399004715004174
Page generated: Mon Dec 14 19:32:15 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy