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Magnesium in PDB 4rvy: Serial Time Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. the S State After Two Flashes (S3)

Enzymatic activity of Serial Time Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. the S State After Two Flashes (S3)

All present enzymatic activity of Serial Time Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. the S State After Two Flashes (S3):
1.10.3.9;

Protein crystallography data

The structure of Serial Time Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. the S State After Two Flashes (S3), PDB code: 4rvy was solved by C.Kupitz, S.Basu, I.Grotjohann, R.Fromme, N.Zatsepin, K.N.Rendek, M.Hunter, R.L.Shoeman, T.A.White, D.Wang, D.James, J.-H.Yang, D.E.Cobb, B.Reeder, R.G.Sierra, H.Liu, A.Barty, A.Aquila, D.Deponte, R.Kirian, S.Bari, J.J.Bergkamp, K.Beyerlein, M.J.Bogan, C.Caleman, T.-C.Chao, C.E.Conrad, K.M.Davis, H.Fleckenstein, L.Galli, S.P.Hau-Riege, S.Kassemeyer, H.Laksmono, M.Liang, L.Lomb, S.Marchesini, A.V.Martin, M.Messerschmidt, D.Milathianaki, K.Nass, A.Ros, S.Roy-Chowdhury, K.Schmidt, M.Seibert, J.Steinbrener, F.Stellato, L.Yan, C.Yoon, T.A.Moore, A.L.Moore, Y.Pushkar, G.J.Williams, S.Boutet, R.B.Doak, U.Weierstall, M.Frank, H.N.Chapman, J.C.H.Spence, P.Fromme, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 102.30 / 5.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 136.610, 228.090, 308.680, 90.00, 90.00, 90.00
R / Rfree (%) 28.1 / 29.1

Other elements in 4rvy:

The structure of Serial Time Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. the S State After Two Flashes (S3) also contains other interesting chemical elements:

Manganese (Mn) 8 atoms
Iron (Fe) 6 atoms
Calcium (Ca) 8 atoms
Chlorine (Cl) 6 atoms

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 72;

Binding sites:

The binding sites of Magnesium atom in the Serial Time Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. the S State After Two Flashes (S3) (pdb code 4rvy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 72 binding sites of Magnesium where determined in the Serial Time Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. the S State After Two Flashes (S3), PDB code: 4rvy:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 72 in 4rvy

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Magnesium binding site 1 out of 72 in the Serial Time Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. the S State After Two Flashes (S3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Serial Time Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. the S State After Two Flashes (S3) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg603

b:20.8
occ:1.00
MG A:CLA603 0.0 20.8 1.0
ND A:CLA603 2.0 18.6 1.0
NB A:CLA603 2.1 18.3 1.0
NC A:CLA603 2.1 18.8 1.0
NA A:CLA603 2.2 18.8 1.0
NE2 A:HIS198 2.2 19.9 1.0
C4D A:CLA603 3.0 19.1 1.0
C4B A:CLA603 3.1 18.6 1.0
C1C A:CLA603 3.1 17.8 1.0
C1B A:CLA603 3.1 18.6 1.0
C1D A:CLA603 3.1 18.3 1.0
C4A A:CLA603 3.2 18.8 1.0
C1A A:CLA603 3.2 19.8 1.0
CE1 A:HIS198 3.2 18.3 1.0
C4C A:CLA603 3.2 17.1 1.0
CD2 A:HIS198 3.2 19.0 1.0
CHC A:CLA603 3.4 17.5 1.0
CHB A:CLA603 3.5 18.1 1.0
CHA A:CLA603 3.5 18.6 1.0
CHD A:CLA603 3.6 19.1 1.0
CE A:MET183 4.1 17.2 1.0
C3D A:CLA603 4.2 18.1 1.0
ND1 A:HIS198 4.3 18.9 1.0
CG A:HIS198 4.4 19.4 1.0
C2D A:CLA603 4.4 19.1 1.0
C3B A:CLA603 4.4 17.2 1.0
CAB D:CLA401 4.4 17.5 1.0
C2C A:CLA603 4.4 15.6 1.0
C2B A:CLA603 4.4 18.8 1.0
C3C A:CLA603 4.5 17.1 1.0
C3A A:CLA603 4.5 19.9 1.0
C2A A:CLA603 4.5 18.4 1.0
CBD A:CLA603 5.0 19.4 1.0

Magnesium binding site 2 out of 72 in 4rvy

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Magnesium binding site 2 out of 72 in the Serial Time Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. the S State After Two Flashes (S3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Serial Time Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. the S State After Two Flashes (S3) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg604

b:21.3
occ:1.00
MG A:CLA604 0.0 21.3 1.0
NB A:CLA604 2.0 21.8 1.0
ND A:CLA604 2.0 20.7 1.0
NC A:CLA604 2.1 20.1 1.0
NA A:CLA604 2.3 21.1 1.0
C4B A:CLA604 3.0 20.9 1.0
C4D A:CLA604 3.0 21.0 1.0
C1C A:CLA604 3.0 20.7 1.0
C1B A:CLA604 3.1 21.5 1.0
C1D A:CLA604 3.1 19.7 1.0
C4C A:CLA604 3.2 19.4 1.0
C4A A:CLA604 3.2 20.8 1.0
C1A A:CLA604 3.3 20.1 1.0
CHC A:CLA604 3.3 19.5 1.0
CHB A:CLA604 3.5 20.7 1.0
CHA A:CLA604 3.5 20.7 1.0
CHD A:CLA604 3.6 20.6 1.0
CBB A:PHO606 3.9 23.2 1.0
C3D A:CLA604 4.2 19.3 1.0
C3B A:CLA604 4.3 21.8 1.0
C2B A:CLA604 4.4 21.4 1.0
C2C A:CLA604 4.4 20.4 1.0
C2D A:CLA604 4.4 20.4 1.0
C3C A:CLA604 4.4 21.0 1.0
CG2 D:ILE178 4.5 19.5 1.0
C3A A:CLA604 4.6 21.1 1.0
C2A A:CLA604 4.6 20.6 1.0
C20 A:PHO606 4.8 19.1 1.0
CG1 D:ILE178 4.8 19.5 1.0
CE1 A:PHE206 4.9 21.3 1.0
CBD A:CLA604 5.0 21.1 1.0
CBA A:CLA604 5.0 22.0 1.0

Magnesium binding site 3 out of 72 in 4rvy

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Magnesium binding site 3 out of 72 in the Serial Time Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. the S State After Two Flashes (S3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Serial Time Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. the S State After Two Flashes (S3) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg607

b:24.3
occ:1.00
MG A:CLA607 0.0 24.3 1.0
NB A:CLA607 2.0 23.4 1.0
ND A:CLA607 2.0 23.8 1.0
NA A:CLA607 2.2 23.1 1.0
NC A:CLA607 2.2 24.4 1.0
NE2 A:HIS118 2.3 23.2 1.0
C4D A:CLA607 3.0 22.8 1.0
C1B A:CLA607 3.0 23.1 1.0
C4B A:CLA607 3.0 23.5 1.0
C4A A:CLA607 3.1 22.8 1.0
C1A A:CLA607 3.2 23.3 1.0
C1D A:CLA607 3.2 21.8 1.0
C1C A:CLA607 3.2 22.9 1.0
CE1 A:HIS118 3.2 24.8 1.0
C4C A:CLA607 3.2 23.1 1.0
CD2 A:HIS118 3.3 23.8 1.0
CHB A:CLA607 3.4 21.8 1.0
CHC A:CLA607 3.4 24.1 1.0
CHA A:CLA607 3.5 21.8 1.0
CHD A:CLA607 3.6 21.8 1.0
C3D A:CLA607 4.2 21.7 1.0
CG1 I:VAL8 4.3 30.8 1.0
C3B A:CLA607 4.3 24.0 1.0
ND1 A:HIS118 4.3 23.5 1.0
C2B A:CLA607 4.3 23.1 1.0
C3A A:CLA607 4.4 24.2 1.0
C2D A:CLA607 4.4 22.1 1.0
CG A:HIS118 4.4 23.3 1.0
C2A A:CLA607 4.5 24.4 1.0
CG2 I:VAL12 4.5 31.4 1.0
C2C A:CLA607 4.5 23.4 1.0
C3C A:CLA607 4.5 23.5 1.0
CMA A:CLA607 4.9 23.6 1.0
CBD A:CLA607 5.0 23.6 1.0

Magnesium binding site 4 out of 72 in 4rvy

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Magnesium binding site 4 out of 72 in the Serial Time Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. the S State After Two Flashes (S3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Serial Time Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. the S State After Two Flashes (S3) within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mg603

b:20.8
occ:1.00
MG a:CLA603 0.0 20.8 1.0
ND a:CLA603 2.0 18.6 1.0
NB a:CLA603 2.1 18.3 1.0
NC a:CLA603 2.1 18.8 1.0
NA a:CLA603 2.2 18.8 1.0
NE2 a:HIS198 2.2 19.9 1.0
C4D a:CLA603 3.0 19.1 1.0
C4B a:CLA603 3.1 18.6 1.0
C1C a:CLA603 3.1 17.8 1.0
C1B a:CLA603 3.1 18.6 1.0
C1D a:CLA603 3.1 18.3 1.0
C4A a:CLA603 3.2 18.8 1.0
C1A a:CLA603 3.2 19.8 1.0
CE1 a:HIS198 3.2 18.3 1.0
C4C a:CLA603 3.2 17.1 1.0
CD2 a:HIS198 3.2 19.0 1.0
CHC a:CLA603 3.4 17.5 1.0
CHB a:CLA603 3.5 18.1 1.0
CHA a:CLA603 3.5 18.6 1.0
CHD a:CLA603 3.6 19.1 1.0
CE a:MET183 4.1 17.2 1.0
C3D a:CLA603 4.2 18.1 1.0
ND1 a:HIS198 4.3 18.9 1.0
CG a:HIS198 4.4 19.4 1.0
C2D a:CLA603 4.4 19.1 1.0
C3B a:CLA603 4.4 17.2 1.0
CAB d:CLA401 4.4 17.5 1.0
C2C a:CLA603 4.4 15.6 1.0
C2B a:CLA603 4.4 18.8 1.0
C3C a:CLA603 4.5 17.1 1.0
C3A a:CLA603 4.5 19.9 1.0
C2A a:CLA603 4.5 18.4 1.0
CBD a:CLA603 5.0 19.4 1.0

Magnesium binding site 5 out of 72 in 4rvy

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Magnesium binding site 5 out of 72 in the Serial Time Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. the S State After Two Flashes (S3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Serial Time Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. the S State After Two Flashes (S3) within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mg604

b:21.3
occ:1.00
MG a:CLA604 0.0 21.3 1.0
NB a:CLA604 2.0 21.8 1.0
ND a:CLA604 2.0 20.7 1.0
NC a:CLA604 2.1 20.1 1.0
NA a:CLA604 2.3 21.1 1.0
C4B a:CLA604 3.0 20.9 1.0
C4D a:CLA604 3.0 21.0 1.0
C1C a:CLA604 3.0 20.7 1.0
C1B a:CLA604 3.1 21.5 1.0
C1D a:CLA604 3.1 19.7 1.0
C4C a:CLA604 3.2 19.4 1.0
C4A a:CLA604 3.2 20.8 1.0
C1A a:CLA604 3.3 20.1 1.0
CHC a:CLA604 3.3 19.5 1.0
CHB a:CLA604 3.5 20.7 1.0
CHA a:CLA604 3.5 20.7 1.0
CHD a:CLA604 3.6 20.6 1.0
CBB a:PHO606 3.9 23.2 1.0
C3D a:CLA604 4.2 19.3 1.0
C3B a:CLA604 4.3 21.8 1.0
C2B a:CLA604 4.4 21.4 1.0
C2C a:CLA604 4.4 20.4 1.0
C2D a:CLA604 4.4 20.4 1.0
C3C a:CLA604 4.4 21.0 1.0
CG2 d:ILE178 4.5 19.5 1.0
C3A a:CLA604 4.6 21.1 1.0
C2A a:CLA604 4.6 20.6 1.0
C20 a:PHO606 4.8 19.1 1.0
CG1 d:ILE178 4.8 19.5 1.0
CE1 a:PHE206 4.9 21.3 1.0
CBD a:CLA604 5.0 21.1 1.0
CBA a:CLA604 5.0 22.0 1.0

Magnesium binding site 6 out of 72 in 4rvy

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Magnesium binding site 6 out of 72 in the Serial Time Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. the S State After Two Flashes (S3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Serial Time Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. the S State After Two Flashes (S3) within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mg607

b:24.3
occ:1.00
MG a:CLA607 0.0 24.3 1.0
NB a:CLA607 2.0 23.4 1.0
ND a:CLA607 2.0 23.8 1.0
NA a:CLA607 2.2 23.1 1.0
NC a:CLA607 2.2 24.4 1.0
NE2 a:HIS118 2.3 23.2 1.0
C4D a:CLA607 3.0 22.8 1.0
C1B a:CLA607 3.0 23.1 1.0
C4B a:CLA607 3.0 23.5 1.0
C4A a:CLA607 3.1 22.8 1.0
C1A a:CLA607 3.2 23.3 1.0
C1D a:CLA607 3.2 21.8 1.0
C1C a:CLA607 3.2 22.9 1.0
CE1 a:HIS118 3.2 24.8 1.0
C4C a:CLA607 3.2 23.1 1.0
CD2 a:HIS118 3.3 23.8 1.0
CHB a:CLA607 3.4 21.8 1.0
CHC a:CLA607 3.4 24.1 1.0
CHA a:CLA607 3.5 21.8 1.0
CHD a:CLA607 3.6 21.8 1.0
C3D a:CLA607 4.2 21.7 1.0
CG1 i:VAL8 4.3 30.8 1.0
C3B a:CLA607 4.3 24.0 1.0
ND1 a:HIS118 4.3 23.5 1.0
C2B a:CLA607 4.3 23.1 1.0
C3A a:CLA607 4.4 24.2 1.0
C2D a:CLA607 4.4 22.1 1.0
CG a:HIS118 4.4 23.3 1.0
C2A a:CLA607 4.5 24.4 1.0
CG2 i:VAL12 4.5 31.4 1.0
C2C a:CLA607 4.5 23.4 1.0
C3C a:CLA607 4.5 23.5 1.0
CMA a:CLA607 4.9 23.6 1.0
CBD a:CLA607 5.0 23.6 1.0

Magnesium binding site 7 out of 72 in 4rvy

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Magnesium binding site 7 out of 72 in the Serial Time Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. the S State After Two Flashes (S3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Serial Time Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. the S State After Two Flashes (S3) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg602

b:36.5
occ:1.00
MG B:CLA602 0.0 36.5 1.0
ND B:CLA602 2.0 38.0 1.0
NB B:CLA602 2.1 36.1 1.0
NC B:CLA602 2.2 35.6 1.0
NA B:CLA602 2.3 39.0 1.0
C4D B:CLA602 2.9 39.9 1.0
C4B B:CLA602 3.1 35.7 1.0
C1B B:CLA602 3.2 35.9 1.0
C1D B:CLA602 3.2 37.9 1.0
C1C B:CLA602 3.2 35.8 1.0
C1A B:CLA602 3.2 41.6 1.0
C4A B:CLA602 3.2 39.3 1.0
C4C B:CLA602 3.3 35.5 1.0
CHC B:CLA602 3.4 35.4 1.0
CHA B:CLA602 3.5 40.8 1.0
CHB B:CLA602 3.5 37.0 1.0
CHD B:CLA602 3.6 36.9 1.0
C10 B:CLA602 3.9 66.0 1.0
O B:TRP185 4.1 33.7 1.0
C3D B:CLA602 4.2 39.7 1.0
CE2 B:PHE190 4.2 31.2 1.0
C12 B:CLA602 4.3 65.5 1.0
C3B B:CLA602 4.4 34.8 1.0
C2D B:CLA602 4.4 38.6 1.0
C2B B:CLA602 4.5 34.8 1.0
CZ B:PHE190 4.5 31.7 1.0
C2C B:CLA602 4.5 34.6 1.0
C2A B:CLA602 4.5 42.9 1.0
C3A B:CLA602 4.5 41.0 1.0
C3C B:CLA602 4.6 35.2 1.0
CBB B:CLA603 4.6 29.6 1.0
C8 B:CLA602 4.6 66.3 1.0
C11 B:CLA602 4.7 65.6 1.0
CBD B:CLA602 4.9 42.2 1.0

Magnesium binding site 8 out of 72 in 4rvy

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Magnesium binding site 8 out of 72 in the Serial Time Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. the S State After Two Flashes (S3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Serial Time Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. the S State After Two Flashes (S3) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg603

b:28.4
occ:1.00
MG B:CLA603 0.0 28.4 1.0
ND B:CLA603 2.0 25.7 1.0
NB B:CLA603 2.1 27.9 1.0
NC B:CLA603 2.2 27.9 1.0
ND1 B:HIS201 2.2 26.5 1.0
NA B:CLA603 2.3 26.9 1.0
C4D B:CLA603 3.0 25.4 1.0
CE1 B:HIS201 3.0 26.8 1.0
C4B B:CLA603 3.1 28.4 1.0
C1C B:CLA603 3.1 28.0 1.0
C1B B:CLA603 3.1 28.0 1.0
C1D B:CLA603 3.2 26.2 1.0
C4A B:CLA603 3.2 27.8 1.0
C4C B:CLA603 3.2 27.2 1.0
C1A B:CLA603 3.2 26.9 1.0
CG B:HIS201 3.3 25.7 1.0
CHC B:CLA603 3.4 27.9 1.0
CHB B:CLA603 3.5 27.2 1.0
CHA B:CLA603 3.5 25.1 1.0
CHD B:CLA603 3.6 26.2 1.0
CB B:HIS201 3.8 26.2 1.0
CZ H:PHE41 3.8 29.6 1.0
NE2 B:HIS201 4.2 27.7 1.0
C3D B:CLA603 4.2 25.9 1.0
CE2 H:PHE41 4.3 27.8 1.0
CA B:HIS201 4.3 26.3 1.0
CD2 B:HIS201 4.4 25.4 1.0
C3B B:CLA603 4.4 28.2 1.0
C2D B:CLA603 4.4 25.8 1.0
C2C B:CLA603 4.5 27.8 1.0
C2B B:CLA603 4.5 28.4 1.0
C3A B:CLA603 4.5 26.5 1.0
C3C B:CLA603 4.5 27.0 1.0
C2A B:CLA603 4.5 26.5 1.0
CE1 H:PHE41 4.9 28.0 1.0
CBD B:CLA603 5.0 25.3 1.0
O B:HIS201 5.0 26.7 1.0

Magnesium binding site 9 out of 72 in 4rvy

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Magnesium binding site 9 out of 72 in the Serial Time Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. the S State After Two Flashes (S3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Serial Time Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. the S State After Two Flashes (S3) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg604

b:24.1
occ:1.00
MG B:CLA604 0.0 24.1 1.0
ND B:CLA604 2.0 23.5 1.0
NB B:CLA604 2.0 22.0 1.0
NC B:CLA604 2.1 22.6 1.0
NE2 B:HIS202 2.2 24.7 1.0
NA B:CLA604 2.3 22.8 1.0
C4D B:CLA604 3.0 21.7 1.0
C4B B:CLA604 3.0 21.5 1.0
C1B B:CLA604 3.1 21.4 1.0
CD2 B:HIS202 3.1 26.2 1.0
C1C B:CLA604 3.1 21.5 1.0
C1D B:CLA604 3.1 22.6 1.0
C4C B:CLA604 3.2 21.5 1.0
C4A B:CLA604 3.2 22.7 1.0
C1A B:CLA604 3.2 22.5 1.0
CE1 B:HIS202 3.2 26.5 1.0
CHC B:CLA604 3.4 21.2 1.0
CHB B:CLA604 3.5 22.0 1.0
CHA B:CLA604 3.5 21.9 1.0
CHD B:CLA604 3.5 22.3 1.0
C3D B:CLA604 4.2 22.0 1.0
CG B:HIS202 4.3 25.7 1.0
ND1 B:HIS202 4.3 25.8 1.0
C3B B:CLA604 4.4 20.8 1.0
C2B B:CLA604 4.4 20.6 1.0
C2D B:CLA604 4.4 22.9 1.0
C2C B:CLA604 4.5 20.9 1.0
C3C B:CLA604 4.5 21.4 1.0
C3A B:CLA604 4.5 23.2 1.0
C2A B:CLA604 4.5 22.9 1.0
C6 B:CLA606 4.6 31.5 1.0
C4 B:CLA606 4.6 31.6 1.0
NE2 B:HIS201 4.7 27.7 1.0
CD2 B:HIS201 4.7 25.4 1.0
C7 B:CLA606 4.8 32.4 1.0
C5 B:CLA606 4.9 30.8 1.0
CBA B:CLA604 5.0 22.2 1.0

Magnesium binding site 10 out of 72 in 4rvy

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Magnesium binding site 10 out of 72 in the Serial Time Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. the S State After Two Flashes (S3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Serial Time Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. the S State After Two Flashes (S3) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg605

b:22.4
occ:1.00
MG B:CLA605 0.0 22.4 1.0
NB B:CLA605 2.0 22.6 1.0
ND B:CLA605 2.1 21.9 1.0
NC B:CLA605 2.1 21.8 1.0
NE2 B:HIS455 2.2 18.4 1.0
NA B:CLA605 2.3 22.1 1.0
C4B B:CLA605 3.0 21.6 1.0
CD2 B:HIS455 3.0 18.5 1.0
C4D B:CLA605 3.1 21.9 1.0
C1C B:CLA605 3.1 21.9 1.0
C1B B:CLA605 3.1 21.0 1.0
C1D B:CLA605 3.2 21.5 1.0
C4C B:CLA605 3.2 21.9 1.0
C4A B:CLA605 3.2 21.4 1.0
CE1 B:HIS455 3.2 18.1 1.0
C1A B:CLA605 3.3 21.8 1.0
CHC B:CLA605 3.3 21.6 1.0
CHB B:CLA605 3.5 21.1 1.0
CHD B:CLA605 3.6 20.8 1.0
CHA B:CLA605 3.6 21.7 1.0
CG B:HIS455 4.2 18.4 1.0
C3D B:CLA605 4.3 21.1 1.0
ND1 B:HIS455 4.3 19.1 1.0
C14 B:CLA613 4.3 30.4 1.0
C3B B:CLA605 4.3 22.6 1.0
C2B B:CLA605 4.4 22.2 1.0
C2C B:CLA605 4.4 21.5 1.0
C2D B:CLA605 4.5 23.1 1.0
C3C B:CLA605 4.5 21.1 1.0
C3A B:CLA605 4.6 22.6 1.0
C2A B:CLA605 4.6 22.3 1.0
C13 B:CLA613 4.9 31.2 1.0
C15 B:CLA613 4.9 30.3 1.0

Reference:

C.Kupitz, S.Basu, I.Grotjohann, R.Fromme, N.A.Zatsepin, K.N.Rendek, M.S.Hunter, R.L.Shoeman, T.A.White, D.Wang, D.James, J.H.Yang, D.E.Cobb, B.Reeder, R.G.Sierra, H.Liu, A.Barty, A.L.Aquila, D.Deponte, R.A.Kirian, S.Bari, J.J.Bergkamp, K.R.Beyerlein, M.J.Bogan, C.Caleman, T.C.Chao, C.E.Conrad, K.M.Davis, H.Fleckenstein, L.Galli, S.P.Hau-Riege, S.Kassemeyer, H.Laksmono, M.Liang, L.Lomb, S.Marchesini, A.V.Martin, M.Messerschmidt, D.Milathianaki, K.Nass, A.Ros, S.Roy-Chowdhury, K.Schmidt, M.Seibert, J.Steinbrener, F.Stellato, L.Yan, C.Yoon, T.A.Moore, A.L.Moore, Y.Pushkar, G.J.Williams, S.Boutet, R.B.Doak, U.Weierstall, M.Frank, H.N.Chapman, J.C.Spence, P.Fromme. Serial Time-Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. Nature V. 513 261 2014.
ISSN: ISSN 0028-0836
PubMed: 25043005
DOI: 10.1038/NATURE13453
Page generated: Tue Aug 20 03:31:24 2024

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