Atomistry » Magnesium » PDB 4rri-4s1k » 4rw3
Atomistry »
  Magnesium »
    PDB 4rri-4s1k »
      4rw3 »

Magnesium in PDB 4rw3: Structural Insights Into Substrate Binding of Brown Spider Venom Class II Phospholipases D

Enzymatic activity of Structural Insights Into Substrate Binding of Brown Spider Venom Class II Phospholipases D

All present enzymatic activity of Structural Insights Into Substrate Binding of Brown Spider Venom Class II Phospholipases D:
3.1.4.4;

Protein crystallography data

The structure of Structural Insights Into Substrate Binding of Brown Spider Venom Class II Phospholipases D, PDB code: 4rw3 was solved by M.A.Coronado, A.Ullah, L.S.Da Silva, D.Chaves-Moreira, L.Vuitika, O.M.Chaim, S.S.Veiga, J.Chahine, M.T.Murakami, R.K.Arni, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.72
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 49.810, 49.300, 56.300, 90.00, 105.83, 90.00
R / Rfree (%) 18.3 / 22.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structural Insights Into Substrate Binding of Brown Spider Venom Class II Phospholipases D (pdb code 4rw3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structural Insights Into Substrate Binding of Brown Spider Venom Class II Phospholipases D, PDB code: 4rw3:

Magnesium binding site 1 out of 1 in 4rw3

Go back to Magnesium Binding Sites List in 4rw3
Magnesium binding site 1 out of 1 in the Structural Insights Into Substrate Binding of Brown Spider Venom Class II Phospholipases D


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structural Insights Into Substrate Binding of Brown Spider Venom Class II Phospholipases D within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:12.9
occ:1.00
 O5 A:IPD304 1.8 21.4 1.0
OE2 A:GLU32 2.0 12.9 1.0
OD1 A:ASP34 2.0 13.3 1.0
O A:HOH410 2.1 13.5 1.0
OD2 A:ASP92 2.1 12.3 1.0
C6 A:IPD304 2.2 22.6 0.7
C5 A:IPD304 2.3 24.0 1.0
O6 A:IPD304 2.6 30.1 1.0
CD A:GLU32 3.0 12.6 1.0
CG A:ASP34 3.1 14.2 1.0
CG A:ASP92 3.1 12.0 1.0
OE1 A:GLU32 3.3 13.2 1.0
CB A:ASP92 3.4 11.7 1.0
OD2 A:ASP34 3.5 14.1 1.0
C4 A:IPD304 3.7 22.4 1.0
C1 A:IPD304 3.8 23.5 1.0
NZ A:LYS94 3.9 13.8 1.0
CE A:LYS94 4.0 13.5 1.0
CD2 A:HIS48 4.1 19.2 1.0
O4 A:IPD304 4.1 24.6 0.7
OD1 A:ASP92 4.3 12.9 1.0
O3 A:IPD304 4.3 22.6 1.0
CG A:GLU32 4.3 12.1 1.0
CB A:ASP34 4.3 13.7 1.0
O1 A:IPD304 4.4 19.1 0.7
C3 A:IPD304 4.4 24.4 0.7
NE2 A:HIS12 4.5 14.9 1.0
NE2 A:HIS48 4.5 19.0 1.0
C2 A:IPD304 4.6 23.6 0.7
CA A:ASP34 4.7 13.3 1.0
CD2 A:HIS12 4.7 14.3 1.0
N A:ASP34 4.8 12.4 1.0
CA A:ASP92 4.9 11.4 1.0

Reference:

M.A.Coronado, A.Ullah, L.S.Da Silva, D.Chaves-Moreira, L.Vuitika, O.M.Chaim, S.S.Veiga, J.Chahine, M.T.Murakami, R.K.Arni. Structural Insights Into Substrate Binding of Brown Spider Venom Class II Phospholipases D. Curr Protein Pept Sci V. 16 768 2015.
PubMed: 25961401
Page generated: Tue Aug 20 03:31:56 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy