Magnesium in PDB 4s0m: Crystal Structure of Nucleoside Diphosphate Kinase at 1.92 A Resolution From Acinetobacter Baumannii

All present enzymatic activity of Crystal Structure of Nucleoside Diphosphate Kinase at 1.92 A Resolution From Acinetobacter Baumannii:
2.7.4.6;

The structure of Crystal Structure of Nucleoside Diphosphate Kinase at 1.92 A Resolution From Acinetobacter Baumannii, PDB code: 4s0m was solved by J.Sikarwar, P.K.Shukla, P.Kaur, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.68 / 1.92
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	68.924, 71.381, 129.427, 90.00, 93.71, 90.00
R / Rfree (%)	21.1 / 25.9

The binding sites of Magnesium atom in the Crystal Structure of Nucleoside Diphosphate Kinase at 1.92 A Resolution From Acinetobacter Baumannii (pdb code 4s0m). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Nucleoside Diphosphate Kinase at 1.92 A Resolution From Acinetobacter Baumannii, PDB code: 4s0m:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Nucleoside Diphosphate Kinase at 1.92 A Resolution From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Nucleoside Diphosphate Kinase at 1.92 A Resolution From Acinetobacter Baumannii within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg201 b:30.0 occ:1.00 O D:HOH373 2.3 33.3 1.0 OD1 D:ASP120 2.4 32.0 1.0 O D:HOH372 2.4 50.5 1.0 O D:HOH377 2.5 42.0 1.0 OD2 D:ASP120 2.5 43.1 1.0 OG D:SER124 2.5 43.9 1.0 CG D:ASP120 2.8 38.5 1.0 CB D:SER124 3.6 37.1 1.0 OG D:SER121 4.2 34.5 1.0 CB D:ASP120 4.3 38.0 1.0 OE1 D:GLU53 4.3 47.1 1.0 O D:HOH316 4.3 29.9 1.0 OE2 D:GLU53 4.5 40.1 1.0 CD D:GLU53 4.8 53.2 1.0 CA D:SER124 4.9 28.1 1.0 CB D:SER121 5.0 30.7 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Nucleoside Diphosphate Kinase at 1.92 A Resolution From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Nucleoside Diphosphate Kinase at 1.92 A Resolution From Acinetobacter Baumannii within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg201 b:28.8 occ:1.00 OD2 G:ASP112 2.2 52.1 1.0 O G:HOH369 2.6 34.4 1.0 CG G:ASP112 3.0 48.8 1.0 OD1 G:ASP112 3.2 59.8 1.0 OD2 G:ASP62 4.0 32.6 1.0 O G:HOH335 4.2 41.3 1.0 CB G:ASP112 4.4 39.8 1.0 O G:HOH375 4.7 57.7 1.0 CG G:ASP62 5.0 32.1 1.0

J.Sikarwar, P.K.Shukla, P.Kaur, S.Sharma, T.P.Singh. Crystal Structure of Nucleoside Diphosphate Kinase at 1.92 A Resolution From Acinetobacter Baumannii To Be Published.