Magnesium in PDB 4s0r: Structure of Gs-Tnra Complex

All present enzymatic activity of Structure of Gs-Tnra Complex:
6.3.1.2;

The structure of Structure of Gs-Tnra Complex, PDB code: 4s0r was solved by M.A.Schumacher, N.G.Chinnam, B.Cuthbert, N.K.Tonthat, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	147.90 / 3.50
Space group	P 3
Cell size a, b, c (Å), α, β, γ (°)	295.800, 295.800, 103.600, 90.00, 90.00, 120.00
R / Rfree (%)	24.3 / 28.4

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 47;

Binding sites:

The binding sites of Magnesium atom in the Structure of Gs-Tnra Complex (pdb code 4s0r). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 47 binding sites of Magnesium where determined in the Structure of Gs-Tnra Complex, PDB code: 4s0r:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 47 in the Structure of Gs-Tnra Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Gs-Tnra Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:37.9 occ:1.00 OE2 A:GLU134 2.2 43.6 1.0 OE1 A:GLN501 2.4 32.6 1.0 OE2 A:GLU196 2.8 46.6 1.0 OE1 A:GLU189 2.9 41.4 1.0 OE1 A:GLU196 3.0 38.8 1.0 CD A:GLU196 3.2 45.0 1.0 CD2 A:HIS245 3.3 38.8 1.0 CD A:GLU134 3.3 51.7 1.0 NE2 A:HIS245 3.3 33.4 1.0 CD A:GLN501 3.4 33.4 1.0 CD A:GLU189 3.7 37.0 1.0 OE2 A:GLU189 3.8 39.1 1.0 NE2 A:GLN501 3.8 38.9 1.0 MG A:MG503 4.0 19.4 1.0 OE1 A:GLU134 4.0 54.2 1.0 CG A:GLU134 4.3 56.6 1.0 CG A:GLU196 4.6 42.7 1.0 CG A:HIS245 4.6 44.9 1.0 CG A:GLN501 4.6 37.0 1.0 OE1 A:GLU132 4.7 76.1 1.0 CE1 A:HIS245 4.7 35.0 1.0 CB A:GLN501 4.7 40.4 1.0 NE2 A:HIS187 4.8 31.0 1.0

Magnesium binding site 2 out of 47 in the Structure of Gs-Tnra Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Gs-Tnra Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg503 b:19.4 occ:1.00 CD2 A:HIS245 2.4 38.8 1.0 OE2 A:GLU333 2.6 26.8 1.0 OE1 A:GLU132 2.7 76.1 1.0 NE2 A:HIS245 2.7 33.4 1.0 CG A:HIS245 2.9 44.9 1.0 CE1 A:HIS245 3.3 35.0 1.0 ND1 A:HIS245 3.4 42.7 1.0 OE2 G:GLU65 3.6 83.8 1.0 CB A:HIS245 3.7 42.4 1.0 CD A:GLU333 3.8 26.9 1.0 CD A:GLU132 3.8 74.4 1.0 OE1 G:GLU65 3.9 82.8 1.0 MG A:MG502 4.0 37.9 1.0 CD G:GLU65 4.1 78.7 1.0 OE2 A:GLU132 4.2 76.8 1.0 OE1 A:GLU333 4.4 31.5 1.0 NE2 A:GLN501 4.7 38.9 1.0 NE A:ARG335 4.7 45.5 1.0 NH1 A:ARG335 4.7 39.2 1.0 NE A:ARG321 4.7 64.7 1.0 NH1 A:ARG321 4.8 83.6 1.0 CG A:GLU333 4.9 25.6 1.0

Magnesium binding site 3 out of 47 in the Structure of Gs-Tnra Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Gs-Tnra Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg504 b:10.3 occ:1.00 OE1 A:GLU363 4.6 32.0 1.0 CB A:GLU363 4.6 47.3 1.0

Magnesium binding site 4 out of 47 in the Structure of Gs-Tnra Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Gs-Tnra Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg505 b:14.3 occ:1.00 CB A:ASP121 5.0 55.5 1.0

Magnesium binding site 5 out of 47 in the Structure of Gs-Tnra Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of Gs-Tnra Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:30.6 occ:1.00 OE2 B:GLU134 2.6 31.3 1.0 OE1 B:GLN501 2.6 45.4 1.0 CD2 B:HIS245 2.7 35.1 1.0 OE2 B:GLU196 3.0 37.9 1.0 OE1 B:GLU196 3.2 51.0 1.0 NE2 B:HIS245 3.3 34.2 1.0 OE2 B:GLU132 3.4 71.8 1.0 MG B:MG503 3.4 24.6 1.0 CD B:GLU196 3.4 44.3 1.0 CD B:GLN501 3.5 49.3 1.0 OE1 B:GLU189 3.6 39.1 1.0 CG B:HIS245 3.8 38.9 1.0 NE2 B:GLN501 3.8 52.1 1.0 CD B:GLU134 3.9 36.5 1.0 CB B:GLU132 4.2 58.2 1.0 CD B:GLU132 4.3 77.2 1.0 CE1 B:HIS245 4.4 31.5 1.0 CB B:HIS245 4.5 36.3 1.0 O B:GLU132 4.6 38.1 1.0 OE1 N:GLU65 4.6 62.5 1.0 ND1 B:HIS245 4.7 32.8 1.0 CG B:GLN501 4.7 58.4 1.0 OE1 B:GLU134 4.7 44.5 1.0 CG B:GLU134 4.7 40.5 1.0 CD B:GLU189 4.7 36.2 1.0 CG B:GLU196 4.9 42.8 1.0 CG B:GLU132 4.9 74.7 1.0 CB B:GLN501 4.9 60.6 1.0

Magnesium binding site 6 out of 47 in the Structure of Gs-Tnra Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of Gs-Tnra Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg503 b:24.6 occ:1.00 OE2 B:GLU333 2.1 35.1 1.0 CD2 B:HIS245 2.5 35.1 1.0 OE2 B:GLU132 2.9 71.8 1.0 OE2 N:GLU65 3.0 59.7 1.0 OE1 N:GLU65 3.0 62.5 1.0 NE2 B:HIS245 3.3 34.2 1.0 CD N:GLU65 3.3 57.3 1.0 MG B:MG502 3.4 30.6 1.0 CD B:GLU333 3.4 37.1 1.0 CG B:HIS245 3.4 38.9 1.0 NH1 B:ARG335 3.7 39.0 1.0 CB B:HIS245 3.9 36.3 1.0 CD B:ARG335 4.0 20.5 1.0 CD B:GLU132 4.1 77.2 1.0 OE1 B:GLU333 4.1 39.5 1.0 NE B:ARG321 4.2 56.8 1.0 CE1 B:HIS245 4.2 31.5 1.0 NE2 B:GLN501 4.3 52.1 1.0 ND1 B:HIS245 4.3 32.8 1.0 NH1 B:ARG321 4.3 69.2 1.0 CG B:GLU333 4.4 32.0 1.0 OE1 B:GLN501 4.5 45.4 1.0 OE1 B:GLU132 4.5 83.9 1.0 CZ B:ARG321 4.5 66.1 1.0 CG B:ARG335 4.6 26.5 1.0 CZ B:ARG335 4.7 29.7 1.0 CG N:GLU65 4.8 52.3 1.0 NE B:ARG335 4.8 20.6 1.0 CD B:GLN501 4.9 49.3 1.0

Magnesium binding site 7 out of 47 in the Structure of Gs-Tnra Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of Gs-Tnra Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg504 b:11.7 occ:1.00 CG B:GLU403 4.9 86.8 1.0 O B:SER401 4.9 60.1 1.0

Magnesium binding site 8 out of 47 in the Structure of Gs-Tnra Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of Gs-Tnra Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg501 b:22.4 occ:1.00 OE2 C:GLU134 2.4 46.3 1.0 OE1 C:GLU189 2.4 59.6 1.0 OE1 C:GLU196 2.8 59.8 1.0 NE2 C:GLN503 2.8 74.0 1.0 CD C:GLU134 3.4 48.4 1.0 CD C:GLU189 3.6 50.8 1.0 CD C:GLU196 4.0 51.7 1.0 OE1 C:GLU134 4.0 57.9 1.0 CD C:GLN503 4.1 82.0 1.0 MG C:MG502 4.2 23.9 1.0 CB C:GLN503 4.3 64.5 1.0 CG C:GLU134 4.3 44.7 1.0 CG C:GLU189 4.4 39.4 1.0 OE2 C:GLU196 4.5 56.3 1.0 OE2 C:GLU189 4.5 44.6 1.0 OE2 C:GLU132 4.6 46.9 1.0 CG C:GLN503 4.8 73.2 1.0 CE1 C:HIS245 4.8 48.6 1.0 OE2 E:GLU65 4.9 73.8 1.0 ND1 C:HIS245 4.9 40.3 1.0 OE1 C:GLN503 4.9 83.2 1.0 NE2 C:HIS187 5.0 48.4 1.0

Magnesium binding site 9 out of 47 in the Structure of Gs-Tnra Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structure of Gs-Tnra Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg502 b:23.9 occ:1.00 ND1 C:HIS245 2.2 40.3 1.0 CE1 C:HIS245 2.5 48.6 1.0 OE1 E:GLU65 2.7 65.2 1.0 OE2 C:GLU132 2.7 46.9 1.0 OE2 E:GLU65 2.8 73.8 1.0 CD E:GLU65 3.1 71.6 1.0 OE1 C:GLU333 3.4 44.3 1.0 CG C:HIS245 3.5 42.8 1.0 OE2 C:GLU333 3.6 31.6 1.0 NE2 C:HIS245 3.8 47.8 1.0 CD C:GLU132 3.8 46.2 1.0 CD C:GLU333 3.9 35.8 1.0 MG C:MG501 4.2 22.4 1.0 OE1 C:GLU132 4.2 40.1 1.0 CD2 C:HIS245 4.2 42.8 1.0 CB C:HIS245 4.3 44.4 1.0 NE C:ARG335 4.5 24.3 1.0 CG E:GLU65 4.5 75.5 1.0 NE C:ARG321 4.6 35.5 1.0

Magnesium binding site 10 out of 47 in the Structure of Gs-Tnra Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structure of Gs-Tnra Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg504 b:73.8 occ:1.00 CG1 C:ILE63 2.9 47.8 1.0 CB C:ILE63 2.9 43.5 1.0 CD1 C:ILE63 3.0 45.6 1.0 CE1 C:HIS416 3.5 67.7 1.0 NE2 C:HIS416 3.5 58.2 1.0 N C:ILE63 3.8 57.2 1.0 CA C:ILE63 3.9 52.0 1.0 CG2 C:ILE63 4.0 37.6 1.0 OE1 C:GLU58 4.2 80.7 1.0 CG C:GLU64 4.4 60.1 1.0 CD C:GLU64 4.4 53.9 1.0 C C:ARG62 4.5 49.6 1.0 OE1 C:GLU64 4.5 36.8 1.0 N C:GLU64 4.6 43.3 1.0 C C:ILE63 4.6 46.1 1.0 O C:VAL61 4.6 67.1 1.0 ND1 C:HIS416 4.7 65.6 1.0 CD2 C:HIS416 4.8 55.7 1.0 OE2 C:GLU64 4.9 57.3 1.0 CD C:GLU58 4.9 72.8 1.0

M.A.Schumacher, N.B.Chinnam, B.Cuthbert, N.K.Tonthat, T.Whitfill. Structures of Regulatory Machinery Reveal Novel Molecular Mechanisms Controlling B. Subtilis Nitrogen Homeostasis. Genes Dev. V. 29 451 2015.
ISSN: ISSN 0890-9369
PubMed: 25691471
DOI: 10.1101/GAD.254714.114