Atomistry » Magnesium » PDB 4s1l-4tny » 4s1m
Atomistry »
  Magnesium »
    PDB 4s1l-4tny »
      4s1m »

Magnesium in PDB 4s1m: Crystal Structure of Pyridoxal Kinase From Entamoeba Histolytica

Enzymatic activity of Crystal Structure of Pyridoxal Kinase From Entamoeba Histolytica

All present enzymatic activity of Crystal Structure of Pyridoxal Kinase From Entamoeba Histolytica:
2.7.1.35;

Protein crystallography data

The structure of Crystal Structure of Pyridoxal Kinase From Entamoeba Histolytica, PDB code: 4s1m was solved by K.F.Tarique, S.Devi, S.A.Abdul Rehman, S.Gourinath, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.64
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 44.131, 91.111, 76.777, 90.00, 99.64, 90.00
R / Rfree (%) 17.4 / 19.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Pyridoxal Kinase From Entamoeba Histolytica (pdb code 4s1m). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Pyridoxal Kinase From Entamoeba Histolytica, PDB code: 4s1m:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4s1m

Go back to Magnesium Binding Sites List in 4s1m
Magnesium binding site 1 out of 2 in the Crystal Structure of Pyridoxal Kinase From Entamoeba Histolytica


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Pyridoxal Kinase From Entamoeba Histolytica within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:22.0
occ:1.00
O A:HOH402 2.0 21.8 1.0
O A:HOH405 2.0 26.4 1.0
O A:HOH401 2.1 20.3 1.0
O A:HOH406 2.1 20.6 1.0
O A:HOH404 2.1 22.0 1.0
O A:HOH403 2.1 24.9 1.0
OD1 A:ASP218 3.9 22.8 1.0
O A:HOH431 3.9 26.4 1.0
OE2 A:GLU146 4.1 20.3 1.0
OD1 A:ASP111 4.1 18.9 1.0
OE1 A:GLU146 4.2 20.6 1.0
CA A:GLY217 4.3 19.8 1.0
OD2 A:ASP111 4.3 18.7 1.0
CG1 A:ILE113 4.3 19.8 1.0
ND2 A:ASN143 4.4 21.4 1.0
OH A:TYR121 4.4 42.0 1.0
C A:GLY217 4.5 18.1 1.0
CD A:GLU146 4.6 23.0 1.0
O A:THR214 4.6 29.4 1.0
CG A:ASP111 4.6 17.1 1.0
N A:ASP218 4.7 16.6 1.0
O A:HOH458 4.8 35.4 1.0
CG2 A:ILE113 4.8 20.7 1.0
CD1 A:ILE113 4.8 18.6 1.0
CB A:ILE113 5.0 19.9 1.0
N A:GLY217 5.0 20.7 1.0

Magnesium binding site 2 out of 2 in 4s1m

Go back to Magnesium Binding Sites List in 4s1m
Magnesium binding site 2 out of 2 in the Crystal Structure of Pyridoxal Kinase From Entamoeba Histolytica


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Pyridoxal Kinase From Entamoeba Histolytica within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg301

b:27.7
occ:1.00
O B:HOH403 2.0 22.8 1.0
O B:HOH529 2.0 30.0 1.0
O B:HOH480 2.0 27.8 1.0
O B:HOH402 2.1 25.6 1.0
O B:HOH401 2.1 24.7 1.0
O B:HOH530 2.3 30.0 1.0
O B:HOH455 4.0 31.2 1.0
OE2 B:GLU146 4.1 23.7 1.0
OD1 B:ASP111 4.1 20.0 1.0
OD1 B:ASP218 4.3 28.2 1.0
OD2 B:ASP111 4.3 23.8 1.0
OH B:TYR121 4.3 47.1 1.0
CA B:GLY217 4.3 23.4 1.0
OE1 B:GLU146 4.3 23.4 1.0
CG1 B:ILE113 4.3 24.3 1.0
ND2 B:ASN143 4.4 30.2 1.0
CG B:ASP111 4.6 20.8 1.0
CD B:GLU146 4.7 28.7 1.0
C B:GLY217 4.7 23.0 1.0
CD1 B:ILE113 4.8 26.1 1.0
N B:ASP218 4.9 20.8 1.0
CG2 B:ILE113 4.9 26.1 1.0
O B:HOH426 5.0 27.5 1.0

Reference:

K.F.Tarique, S.Devi, S.A.Abdul Rehman, S.Gourinath. Crystal Structure of Pyridoxal Kinase From Entamoeba Histolytica To Be Published.
Page generated: Mon Dec 14 19:33:04 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy