Magnesium in PDB 4tnj: Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 4.5 A Resolution
Enzymatic activity of Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 4.5 A Resolution
All present enzymatic activity of Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 4.5 A Resolution:
1.10.3.9;
Protein crystallography data
The structure of Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 4.5 A Resolution, PDB code: 4tnj
was solved by
J.Kern,
R.Tran,
R.Alonso-Mori,
S.Koroidov,
N.Echols,
J.Hattne,
M.Ibrahim,
S.Gul,
H.Laksmono,
R.G.Sierra,
R.J.Gildea,
G.Han,
J.Hellmich,
B.Lassalle-Kaiser,
R.Chatterjee,
A.Brewster,
C.A.Stan,
C.Gloeckner,
A.Lampe,
D.Difiore,
D.Milathianaki,
A.R.Fry,
M.M.Seibert,
J.E.Koglin,
E.Gallo,
J.Uhlig,
D.Sokaras,
T.-C.Weng,
P.H.Zwart,
D.E.Skinner,
M.J.Bogan,
M.Messerschmidt,
P.Glatzel,
G.J.Williams,
S.Boutet,
P.D.Adams,
A.Zouni,
J.Messinger,
N.K.Sauter,
U.Bergmann,
J.Yano,
V.K.Yachandra,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
72.97 /
4.50
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
132.298,
228.713,
307.976,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
27.6 /
28.4
|
Other elements in 4tnj:
The structure of Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 4.5 A Resolution also contains other interesting chemical elements:
Magnesium Binding Sites:
Magnesium binding site 1 out
of 70 in 4tnj
Go back to
Magnesium Binding Sites List in 4tnj
Magnesium binding site 1 out
of 70 in the Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 4.5 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 4.5 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg402
b:0.2
occ:1.00
|
MG
|
A:CLA402
|
0.0
|
0.2
|
1.0
|
NB
|
A:CLA402
|
2.0
|
0.3
|
1.0
|
ND
|
A:CLA402
|
2.0
|
0.2
|
1.0
|
NC
|
A:CLA402
|
2.1
|
0.2
|
1.0
|
NA
|
A:CLA402
|
2.1
|
0.5
|
1.0
|
NE2
|
A:HIS198
|
2.9
|
0.8
|
1.0
|
C4D
|
A:CLA402
|
2.9
|
0.4
|
1.0
|
C1B
|
A:CLA402
|
3.0
|
0.4
|
1.0
|
C4A
|
A:CLA402
|
3.0
|
0.8
|
1.0
|
C1C
|
A:CLA402
|
3.1
|
0.7
|
1.0
|
C4B
|
A:CLA402
|
3.1
|
0.3
|
1.0
|
C4C
|
A:CLA402
|
3.1
|
0.3
|
1.0
|
C1A
|
A:CLA402
|
3.2
|
0.1
|
1.0
|
C1D
|
A:CLA402
|
3.2
|
0.7
|
1.0
|
CHB
|
A:CLA402
|
3.4
|
0.2
|
1.0
|
CHC
|
A:CLA402
|
3.4
|
1.0
|
1.0
|
CHA
|
A:CLA402
|
3.5
|
0.3
|
1.0
|
CHD
|
A:CLA402
|
3.5
|
0.8
|
1.0
|
CE1
|
A:HIS198
|
3.7
|
0.1
|
1.0
|
CD2
|
A:HIS198
|
4.0
|
0.9
|
1.0
|
CAB
|
D:CLA405
|
4.1
|
0.7
|
1.0
|
C3D
|
A:CLA402
|
4.3
|
1.0
|
1.0
|
C2B
|
A:CLA402
|
4.3
|
0.6
|
1.0
|
C3B
|
A:CLA402
|
4.3
|
0.5
|
1.0
|
C2C
|
A:CLA402
|
4.3
|
0.2
|
1.0
|
C2D
|
A:CLA402
|
4.4
|
0.0
|
1.0
|
C3C
|
A:CLA402
|
4.4
|
0.3
|
1.0
|
C3A
|
A:CLA402
|
4.4
|
0.3
|
1.0
|
C2A
|
A:CLA402
|
4.5
|
0.7
|
1.0
|
SD
|
A:MET183
|
4.7
|
0.7
|
1.0
|
CBB
|
D:CLA405
|
4.7
|
0.2
|
1.0
|
ND1
|
A:HIS198
|
4.9
|
0.7
|
1.0
|
CBD
|
A:CLA402
|
4.9
|
0.7
|
1.0
|
CHC
|
D:CLA405
|
5.0
|
0.5
|
1.0
|
|
Magnesium binding site 2 out
of 70 in 4tnj
Go back to
Magnesium Binding Sites List in 4tnj
Magnesium binding site 2 out
of 70 in the Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 4.5 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 4.5 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg403
b:0.2
occ:1.00
|
MG
|
A:CLA403
|
0.0
|
0.2
|
1.0
|
NB
|
A:CLA403
|
2.0
|
0.9
|
1.0
|
ND
|
A:CLA403
|
2.0
|
0.6
|
1.0
|
NC
|
A:CLA403
|
2.1
|
0.7
|
1.0
|
NA
|
A:CLA403
|
2.1
|
0.7
|
1.0
|
C4D
|
A:CLA403
|
2.9
|
0.5
|
1.0
|
C1B
|
A:CLA403
|
3.0
|
0.5
|
1.0
|
C4A
|
A:CLA403
|
3.0
|
0.7
|
1.0
|
C4B
|
A:CLA403
|
3.1
|
0.7
|
1.0
|
C1C
|
A:CLA403
|
3.1
|
1.0
|
1.0
|
C4C
|
A:CLA403
|
3.1
|
0.8
|
1.0
|
C1A
|
A:CLA403
|
3.2
|
0.0
|
1.0
|
C1D
|
A:CLA403
|
3.2
|
0.6
|
1.0
|
CHB
|
A:CLA403
|
3.4
|
0.2
|
1.0
|
CHC
|
A:CLA403
|
3.4
|
0.5
|
1.0
|
CHA
|
A:CLA403
|
3.5
|
0.7
|
1.0
|
CHD
|
A:CLA403
|
3.5
|
0.4
|
1.0
|
CBB
|
D:PHO401
|
4.1
|
0.5
|
1.0
|
O1A
|
A:CLA403
|
4.3
|
0.1
|
1.0
|
C3D
|
A:CLA403
|
4.3
|
0.3
|
1.0
|
C2B
|
A:CLA403
|
4.3
|
0.9
|
1.0
|
C3B
|
A:CLA403
|
4.3
|
0.9
|
1.0
|
C2C
|
A:CLA403
|
4.3
|
0.0
|
1.0
|
C2D
|
A:CLA403
|
4.4
|
0.8
|
1.0
|
C3C
|
A:CLA403
|
4.4
|
0.6
|
1.0
|
C3A
|
A:CLA403
|
4.4
|
0.0
|
1.0
|
C2A
|
A:CLA403
|
4.5
|
0.9
|
1.0
|
C20
|
D:PHO401
|
4.8
|
0.5
|
1.0
|
CG2
|
A:THR179
|
4.9
|
0.7
|
1.0
|
CBD
|
A:CLA403
|
4.9
|
0.0
|
1.0
|
CGA
|
A:CLA403
|
5.0
|
0.6
|
1.0
|
|
Magnesium binding site 3 out
of 70 in 4tnj
Go back to
Magnesium Binding Sites List in 4tnj
Magnesium binding site 3 out
of 70 in the Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 4.5 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 4.5 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg404
b:0.0
occ:1.00
|
MG
|
A:CLA404
|
0.0
|
0.0
|
1.0
|
NB
|
A:CLA404
|
2.0
|
0.9
|
1.0
|
ND
|
A:CLA404
|
2.0
|
0.6
|
1.0
|
NC
|
A:CLA404
|
2.1
|
0.6
|
1.0
|
NA
|
A:CLA404
|
2.1
|
0.4
|
1.0
|
C4D
|
A:CLA404
|
2.9
|
0.6
|
1.0
|
C1B
|
A:CLA404
|
3.0
|
0.5
|
1.0
|
C4A
|
A:CLA404
|
3.1
|
0.3
|
1.0
|
C4B
|
A:CLA404
|
3.1
|
0.8
|
1.0
|
C1C
|
A:CLA404
|
3.1
|
0.0
|
1.0
|
C4C
|
A:CLA404
|
3.1
|
0.9
|
1.0
|
C1A
|
A:CLA404
|
3.2
|
0.4
|
1.0
|
C1D
|
A:CLA404
|
3.2
|
0.9
|
1.0
|
CHB
|
A:CLA404
|
3.4
|
0.8
|
1.0
|
CHC
|
A:CLA404
|
3.4
|
1.0
|
1.0
|
CHA
|
A:CLA404
|
3.5
|
1.0
|
1.0
|
CHD
|
A:CLA404
|
3.5
|
0.3
|
1.0
|
CBB
|
D:PHO402
|
4.0
|
0.6
|
1.0
|
C3D
|
A:CLA404
|
4.3
|
0.8
|
1.0
|
C2B
|
A:CLA404
|
4.3
|
0.4
|
1.0
|
C3B
|
A:CLA404
|
4.3
|
0.7
|
1.0
|
C2C
|
A:CLA404
|
4.3
|
0.1
|
1.0
|
C2D
|
A:CLA404
|
4.4
|
0.1
|
1.0
|
C3C
|
A:CLA404
|
4.4
|
0.2
|
1.0
|
C3A
|
A:CLA404
|
4.4
|
0.5
|
1.0
|
C2A
|
A:CLA404
|
4.5
|
0.2
|
1.0
|
C20
|
D:PHO402
|
4.6
|
0.9
|
1.0
|
CBA
|
A:CLA404
|
4.8
|
0.2
|
1.0
|
CE1
|
A:PHE206
|
4.9
|
0.5
|
1.0
|
CBD
|
A:CLA404
|
4.9
|
0.2
|
1.0
|
CG2
|
D:ILE178
|
5.0
|
0.4
|
1.0
|
|
Magnesium binding site 4 out
of 70 in 4tnj
Go back to
Magnesium Binding Sites List in 4tnj
Magnesium binding site 4 out
of 70 in the Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 4.5 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 4.5 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg405
b:1.0
occ:1.00
|
MG
|
A:CLA405
|
0.0
|
1.0
|
1.0
|
NB
|
A:CLA405
|
2.0
|
0.5
|
1.0
|
ND
|
A:CLA405
|
2.0
|
0.1
|
1.0
|
NC
|
A:CLA405
|
2.1
|
0.1
|
1.0
|
NA
|
A:CLA405
|
2.1
|
0.3
|
1.0
|
NE2
|
A:HIS118
|
2.9
|
1.0
|
1.0
|
C4D
|
A:CLA405
|
2.9
|
0.3
|
1.0
|
C1B
|
A:CLA405
|
3.0
|
0.4
|
1.0
|
C4A
|
A:CLA405
|
3.0
|
0.3
|
1.0
|
C4B
|
A:CLA405
|
3.1
|
0.0
|
1.0
|
C1C
|
A:CLA405
|
3.1
|
0.9
|
1.0
|
C4C
|
A:CLA405
|
3.1
|
0.9
|
1.0
|
C1D
|
A:CLA405
|
3.2
|
0.3
|
1.0
|
C1A
|
A:CLA405
|
3.2
|
0.4
|
1.0
|
CHB
|
A:CLA405
|
3.4
|
0.9
|
1.0
|
CHC
|
A:CLA405
|
3.4
|
0.8
|
1.0
|
CHA
|
A:CLA405
|
3.5
|
0.6
|
1.0
|
CHD
|
A:CLA405
|
3.5
|
0.4
|
1.0
|
CE1
|
A:HIS118
|
3.6
|
0.9
|
1.0
|
CD2
|
A:HIS118
|
3.9
|
0.3
|
1.0
|
CG2
|
I:VAL12
|
4.1
|
0.3
|
1.0
|
C3D
|
A:CLA405
|
4.3
|
0.5
|
1.0
|
C2B
|
A:CLA405
|
4.3
|
0.2
|
1.0
|
C3B
|
A:CLA405
|
4.3
|
0.5
|
1.0
|
CG1
|
I:VAL8
|
4.3
|
0.4
|
1.0
|
C2C
|
A:CLA405
|
4.3
|
0.7
|
1.0
|
C2D
|
A:CLA405
|
4.4
|
0.2
|
1.0
|
C3C
|
A:CLA405
|
4.4
|
0.8
|
1.0
|
C3A
|
A:CLA405
|
4.4
|
0.8
|
1.0
|
C2A
|
A:CLA405
|
4.5
|
0.2
|
1.0
|
ND1
|
A:HIS118
|
4.7
|
0.2
|
1.0
|
CBD
|
A:CLA405
|
4.9
|
0.2
|
1.0
|
CBA
|
A:CLA405
|
5.0
|
0.0
|
1.0
|
CG
|
A:HIS118
|
5.0
|
0.8
|
1.0
|
|
Magnesium binding site 5 out
of 70 in 4tnj
Go back to
Magnesium Binding Sites List in 4tnj
Magnesium binding site 5 out
of 70 in the Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 4.5 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 4.5 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg601
b:0.4
occ:1.00
|
MG
|
B:CLA601
|
0.0
|
0.4
|
1.0
|
NB
|
B:CLA601
|
2.0
|
0.5
|
1.0
|
ND
|
B:CLA601
|
2.0
|
0.9
|
1.0
|
NC
|
B:CLA601
|
2.1
|
0.8
|
1.0
|
NA
|
B:CLA601
|
2.1
|
0.2
|
1.0
|
C4D
|
B:CLA601
|
2.9
|
0.2
|
1.0
|
C1B
|
B:CLA601
|
3.0
|
0.5
|
1.0
|
C4A
|
B:CLA601
|
3.1
|
0.8
|
1.0
|
C4B
|
B:CLA601
|
3.1
|
0.2
|
1.0
|
C1C
|
B:CLA601
|
3.1
|
0.1
|
1.0
|
C4C
|
B:CLA601
|
3.2
|
0.3
|
1.0
|
C1A
|
B:CLA601
|
3.2
|
0.8
|
1.0
|
C1D
|
B:CLA601
|
3.2
|
0.9
|
1.0
|
CHB
|
B:CLA601
|
3.4
|
0.1
|
1.0
|
CHC
|
B:CLA601
|
3.4
|
0.4
|
1.0
|
CHA
|
B:CLA601
|
3.5
|
0.1
|
1.0
|
CHD
|
B:CLA601
|
3.6
|
0.7
|
1.0
|
O
|
B:TRP185
|
3.9
|
0.9
|
1.0
|
C3D
|
B:CLA601
|
4.3
|
0.8
|
1.0
|
C2B
|
B:CLA601
|
4.3
|
0.6
|
1.0
|
C3B
|
B:CLA601
|
4.3
|
0.2
|
1.0
|
C2C
|
B:CLA601
|
4.3
|
0.1
|
1.0
|
C2D
|
B:CLA601
|
4.4
|
0.3
|
1.0
|
C3C
|
B:CLA601
|
4.4
|
0.2
|
1.0
|
C3A
|
B:CLA601
|
4.4
|
0.4
|
1.0
|
C2A
|
B:CLA601
|
4.5
|
0.2
|
1.0
|
CE1
|
B:PHE190
|
4.9
|
0.3
|
1.0
|
CBD
|
B:CLA601
|
4.9
|
0.3
|
1.0
|
|
Magnesium binding site 6 out
of 70 in 4tnj
Go back to
Magnesium Binding Sites List in 4tnj
Magnesium binding site 6 out
of 70 in the Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 4.5 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 4.5 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg602
b:0.5
occ:1.00
|
MG
|
B:CLA602
|
0.0
|
0.5
|
1.0
|
NB
|
B:CLA602
|
2.0
|
0.0
|
1.0
|
ND
|
B:CLA602
|
2.0
|
0.5
|
1.0
|
NA
|
B:CLA602
|
2.1
|
0.4
|
1.0
|
NC
|
B:CLA602
|
2.1
|
0.9
|
1.0
|
C4D
|
B:CLA602
|
2.9
|
0.1
|
1.0
|
NE2
|
B:HIS202
|
3.0
|
0.3
|
1.0
|
C1B
|
B:CLA602
|
3.0
|
0.7
|
1.0
|
C4A
|
B:CLA602
|
3.0
|
0.3
|
1.0
|
C4B
|
B:CLA602
|
3.1
|
0.5
|
1.0
|
C1C
|
B:CLA602
|
3.1
|
0.8
|
1.0
|
C4C
|
B:CLA602
|
3.1
|
0.5
|
1.0
|
C1D
|
B:CLA602
|
3.2
|
0.7
|
1.0
|
C1A
|
B:CLA602
|
3.2
|
0.2
|
1.0
|
CHB
|
B:CLA602
|
3.4
|
0.5
|
1.0
|
CHC
|
B:CLA602
|
3.4
|
0.7
|
1.0
|
CHA
|
B:CLA602
|
3.5
|
0.9
|
1.0
|
CHD
|
B:CLA602
|
3.5
|
0.2
|
1.0
|
CD2
|
B:HIS202
|
3.7
|
0.7
|
1.0
|
CE1
|
B:HIS202
|
3.9
|
1.0
|
1.0
|
C7
|
B:CLA604
|
4.0
|
0.5
|
1.0
|
C5
|
B:CLA604
|
4.0
|
0.8
|
1.0
|
C3D
|
B:CLA602
|
4.3
|
0.3
|
1.0
|
C2B
|
B:CLA602
|
4.3
|
0.5
|
1.0
|
C3B
|
B:CLA602
|
4.3
|
0.8
|
1.0
|
C2C
|
B:CLA602
|
4.3
|
0.1
|
1.0
|
C2D
|
B:CLA602
|
4.4
|
0.4
|
1.0
|
C3C
|
B:CLA602
|
4.4
|
0.7
|
1.0
|
C3A
|
B:CLA602
|
4.4
|
0.4
|
1.0
|
C2A
|
B:CLA602
|
4.5
|
0.0
|
1.0
|
CE1
|
B:HIS201
|
4.6
|
0.8
|
1.0
|
C6
|
B:CLA604
|
4.7
|
0.2
|
1.0
|
CG
|
B:HIS202
|
4.9
|
0.2
|
1.0
|
O2A
|
B:CLA602
|
4.9
|
1.0
|
1.0
|
CBA
|
B:CLA602
|
4.9
|
0.7
|
1.0
|
ND1
|
B:HIS202
|
4.9
|
0.1
|
1.0
|
CBD
|
B:CLA602
|
4.9
|
0.2
|
1.0
|
|
Magnesium binding site 7 out
of 70 in 4tnj
Go back to
Magnesium Binding Sites List in 4tnj
Magnesium binding site 7 out
of 70 in the Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 4.5 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 4.5 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg603
b:0.4
occ:1.00
|
MG
|
B:CLA603
|
0.0
|
0.4
|
1.0
|
NB
|
B:CLA603
|
2.0
|
0.9
|
1.0
|
ND
|
B:CLA603
|
2.0
|
0.3
|
1.0
|
NA
|
B:CLA603
|
2.1
|
0.8
|
1.0
|
NC
|
B:CLA603
|
2.1
|
0.4
|
1.0
|
NE2
|
B:HIS455
|
2.9
|
1.0
|
1.0
|
C4D
|
B:CLA603
|
2.9
|
0.7
|
1.0
|
C1B
|
B:CLA603
|
3.0
|
0.0
|
1.0
|
C4A
|
B:CLA603
|
3.0
|
0.8
|
1.0
|
C4B
|
B:CLA603
|
3.1
|
0.8
|
1.0
|
C1C
|
B:CLA603
|
3.1
|
0.7
|
1.0
|
C4C
|
B:CLA603
|
3.2
|
0.1
|
1.0
|
C1D
|
B:CLA603
|
3.2
|
1.0
|
1.0
|
C1A
|
B:CLA603
|
3.2
|
0.7
|
1.0
|
CHB
|
B:CLA603
|
3.4
|
0.5
|
1.0
|
CHC
|
B:CLA603
|
3.4
|
0.5
|
1.0
|
CHA
|
B:CLA603
|
3.5
|
0.9
|
1.0
|
CHD
|
B:CLA603
|
3.5
|
0.3
|
1.0
|
CD2
|
B:HIS455
|
3.6
|
0.1
|
1.0
|
C14
|
B:CLA611
|
3.8
|
0.9
|
1.0
|
CE1
|
B:HIS455
|
3.9
|
0.6
|
1.0
|
C3D
|
B:CLA603
|
4.3
|
0.1
|
1.0
|
C15
|
B:CLA611
|
4.3
|
0.7
|
1.0
|
C2B
|
B:CLA603
|
4.3
|
0.4
|
1.0
|
C3B
|
B:CLA603
|
4.3
|
0.9
|
1.0
|
C2C
|
B:CLA603
|
4.3
|
0.1
|
1.0
|
C2D
|
B:CLA603
|
4.4
|
1.0
|
1.0
|
C13
|
B:CLA611
|
4.4
|
0.2
|
1.0
|
C3C
|
B:CLA603
|
4.4
|
0.2
|
1.0
|
C3A
|
B:CLA603
|
4.4
|
0.3
|
1.0
|
C2A
|
B:CLA603
|
4.5
|
1.0
|
1.0
|
CG
|
B:HIS455
|
4.8
|
0.2
|
1.0
|
ND1
|
B:HIS455
|
4.9
|
0.5
|
1.0
|
CBD
|
B:CLA603
|
5.0
|
0.2
|
1.0
|
|
Magnesium binding site 8 out
of 70 in 4tnj
Go back to
Magnesium Binding Sites List in 4tnj
Magnesium binding site 8 out
of 70 in the Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 4.5 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 4.5 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg604
b:0.0
occ:1.00
|
MG
|
B:CLA604
|
0.0
|
0.0
|
1.0
|
NB
|
B:CLA604
|
2.0
|
0.9
|
1.0
|
ND
|
B:CLA604
|
2.0
|
0.6
|
1.0
|
NC
|
B:CLA604
|
2.1
|
0.4
|
1.0
|
NA
|
B:CLA604
|
2.1
|
0.2
|
1.0
|
C4D
|
B:CLA604
|
2.9
|
0.3
|
1.0
|
NE2
|
B:HIS100
|
2.9
|
0.6
|
1.0
|
C1B
|
B:CLA604
|
3.0
|
0.3
|
1.0
|
C4A
|
B:CLA604
|
3.0
|
0.7
|
1.0
|
C4B
|
B:CLA604
|
3.1
|
0.8
|
1.0
|
C1C
|
B:CLA604
|
3.1
|
1.0
|
1.0
|
C4C
|
B:CLA604
|
3.1
|
0.1
|
1.0
|
C1A
|
B:CLA604
|
3.2
|
0.4
|
1.0
|
C1D
|
B:CLA604
|
3.2
|
0.9
|
1.0
|
CHB
|
B:CLA604
|
3.4
|
0.2
|
1.0
|
CHC
|
B:CLA604
|
3.4
|
0.7
|
1.0
|
CHA
|
B:CLA604
|
3.5
|
0.8
|
1.0
|
CHD
|
B:CLA604
|
3.5
|
0.4
|
1.0
|
CD2
|
B:HIS100
|
3.8
|
0.4
|
1.0
|
CE1
|
B:HIS100
|
3.9
|
0.0
|
1.0
|
C2
|
B:CLA603
|
3.9
|
0.6
|
1.0
|
C1
|
B:CLA603
|
4.1
|
0.4
|
1.0
|
C3D
|
B:CLA604
|
4.3
|
0.9
|
1.0
|
C2B
|
B:CLA604
|
4.3
|
0.9
|
1.0
|
C3B
|
B:CLA604
|
4.3
|
0.6
|
1.0
|
C2C
|
B:CLA604
|
4.3
|
0.3
|
1.0
|
C3C
|
B:CLA604
|
4.4
|
0.1
|
1.0
|
C2D
|
B:CLA604
|
4.4
|
0.1
|
1.0
|
C3A
|
B:CLA604
|
4.4
|
0.8
|
1.0
|
C2A
|
B:CLA604
|
4.5
|
0.2
|
1.0
|
O2A
|
B:CLA603
|
4.7
|
0.8
|
1.0
|
O1A
|
B:CLA603
|
4.7
|
0.2
|
1.0
|
C3
|
B:CLA603
|
4.7
|
0.2
|
1.0
|
CBD
|
B:CLA604
|
4.9
|
0.8
|
1.0
|
ND1
|
B:HIS100
|
4.9
|
0.4
|
1.0
|
CG
|
B:HIS100
|
4.9
|
0.3
|
1.0
|
CBA
|
B:CLA604
|
5.0
|
0.2
|
1.0
|
|
Magnesium binding site 9 out
of 70 in 4tnj
Go back to
Magnesium Binding Sites List in 4tnj
Magnesium binding site 9 out
of 70 in the Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 4.5 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 4.5 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg605
b:0.2
occ:1.00
|
MG
|
B:CLA605
|
0.0
|
0.2
|
1.0
|
NB
|
B:CLA605
|
2.0
|
1.0
|
1.0
|
ND
|
B:CLA605
|
2.0
|
0.9
|
1.0
|
NC
|
B:CLA605
|
2.1
|
0.9
|
1.0
|
NA
|
B:CLA605
|
2.1
|
1.0
|
1.0
|
C4D
|
B:CLA605
|
2.9
|
0.9
|
1.0
|
ND1
|
B:HIS157
|
3.0
|
0.7
|
1.0
|
C1B
|
B:CLA605
|
3.0
|
0.6
|
1.0
|
C4A
|
B:CLA605
|
3.0
|
0.3
|
1.0
|
C4B
|
B:CLA605
|
3.1
|
0.7
|
1.0
|
C1C
|
B:CLA605
|
3.1
|
0.5
|
1.0
|
C4C
|
B:CLA605
|
3.1
|
0.7
|
1.0
|
C1A
|
B:CLA605
|
3.2
|
0.7
|
1.0
|
C1D
|
B:CLA605
|
3.2
|
0.4
|
1.0
|
CE1
|
B:HIS157
|
3.4
|
0.3
|
1.0
|
CHB
|
B:CLA605
|
3.4
|
0.3
|
1.0
|
CHC
|
B:CLA605
|
3.4
|
0.6
|
1.0
|
CHA
|
B:CLA605
|
3.5
|
0.4
|
1.0
|
CHD
|
B:CLA605
|
3.5
|
0.9
|
1.0
|
C5
|
B:LMT622
|
3.8
|
0.8
|
1.0
|
C6
|
B:LMT622
|
3.9
|
0.6
|
1.0
|
C4
|
B:LMT622
|
3.9
|
0.6
|
1.0
|
CG
|
B:HIS157
|
4.2
|
0.3
|
1.0
|
C3D
|
B:CLA605
|
4.3
|
0.3
|
1.0
|
C2B
|
B:CLA605
|
4.3
|
0.7
|
1.0
|
C3B
|
B:CLA605
|
4.3
|
0.9
|
1.0
|
C2C
|
B:CLA605
|
4.3
|
0.1
|
1.0
|
C2D
|
B:CLA605
|
4.4
|
0.6
|
1.0
|
C3C
|
B:CLA605
|
4.4
|
0.1
|
1.0
|
C3A
|
B:CLA605
|
4.4
|
0.6
|
1.0
|
C2A
|
B:CLA605
|
4.5
|
0.1
|
1.0
|
NE2
|
B:HIS157
|
4.6
|
0.9
|
1.0
|
CB
|
B:HIS157
|
4.8
|
0.9
|
1.0
|
C3
|
B:LMT622
|
4.9
|
0.7
|
1.0
|
CBD
|
B:CLA605
|
4.9
|
0.7
|
1.0
|
C7
|
B:LMT622
|
5.0
|
0.3
|
1.0
|
|
Magnesium binding site 10 out
of 70 in 4tnj
Go back to
Magnesium Binding Sites List in 4tnj
Magnesium binding site 10 out
of 70 in the Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 4.5 A Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Rt Xfel Structure of Photosystem II 500 Ms After the 2ND Illumination (2F) at 4.5 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg606
b:0.1
occ:1.00
|
MG
|
B:CLA606
|
0.0
|
0.1
|
1.0
|
NB
|
B:CLA606
|
2.0
|
0.8
|
1.0
|
ND
|
B:CLA606
|
2.0
|
0.9
|
1.0
|
NA
|
B:CLA606
|
2.1
|
0.5
|
1.0
|
NC
|
B:CLA606
|
2.1
|
0.9
|
1.0
|
C4D
|
B:CLA606
|
2.9
|
0.7
|
1.0
|
C1B
|
B:CLA606
|
3.0
|
0.7
|
1.0
|
C4A
|
B:CLA606
|
3.0
|
0.6
|
1.0
|
C4B
|
B:CLA606
|
3.1
|
0.8
|
1.0
|
C1C
|
B:CLA606
|
3.1
|
0.9
|
1.0
|
C4C
|
B:CLA606
|
3.1
|
0.9
|
1.0
|
C1A
|
B:CLA606
|
3.2
|
0.9
|
1.0
|
C1D
|
B:CLA606
|
3.2
|
0.0
|
1.0
|
CHB
|
B:CLA606
|
3.4
|
0.4
|
1.0
|
C30
|
B:LMG621
|
3.4
|
0.5
|
1.0
|
CHC
|
B:CLA606
|
3.4
|
0.1
|
1.0
|
CHA
|
B:CLA606
|
3.5
|
0.6
|
1.0
|
CHD
|
B:CLA606
|
3.5
|
0.1
|
1.0
|
CE
|
B:MET37
|
3.7
|
0.0
|
1.0
|
O10
|
B:LMG621
|
3.7
|
1.0
|
1.0
|
C32
|
B:LMG621
|
4.0
|
0.9
|
1.0
|
C28
|
B:LMG621
|
4.2
|
0.8
|
1.0
|
C3D
|
B:CLA606
|
4.3
|
0.9
|
1.0
|
C2B
|
B:CLA606
|
4.3
|
0.8
|
1.0
|
C31
|
B:LMG621
|
4.3
|
0.6
|
1.0
|
C3B
|
B:CLA606
|
4.3
|
0.5
|
1.0
|
C29
|
B:LMG621
|
4.3
|
0.5
|
1.0
|
C2C
|
B:CLA606
|
4.3
|
0.9
|
1.0
|
C2D
|
B:CLA606
|
4.4
|
0.1
|
1.0
|
C3C
|
B:CLA606
|
4.4
|
0.8
|
1.0
|
C3A
|
B:CLA606
|
4.4
|
1.0
|
1.0
|
C2A
|
B:CLA606
|
4.5
|
0.8
|
1.0
|
CBD
|
B:CLA606
|
4.9
|
0.6
|
1.0
|
|
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ISSN: ESSN 2041-1723
PubMed: 25006873
DOI: 10.1038/NCOMMS5371
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