Magnesium in PDB 4u0u: Wild Type Eukaryotic Fic Domain Containing Protein with Adp

The structure of Wild Type Eukaryotic Fic Domain Containing Protein with Adp, PDB code: 4u0u was solved by A.R.Cole, T.D.Bunney, M.Katan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.62 / 2.98
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	77.750, 109.040, 131.600, 90.00, 90.00, 90.00
R / Rfree (%)	19.9 / 25.6

The binding sites of Magnesium atom in the Wild Type Eukaryotic Fic Domain Containing Protein with Adp (pdb code 4u0u). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Wild Type Eukaryotic Fic Domain Containing Protein with Adp, PDB code: 4u0u:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Wild Type Eukaryotic Fic Domain Containing Protein with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Wild Type Eukaryotic Fic Domain Containing Protein with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg504 b:36.0 occ:1.00 O A:HOH687 1.9 30.0 1.0 O3B A:ADP503 2.3 11.7 0.5 O2A A:ADP503 2.4 28.6 0.5 OD1 A:ASP367 2.7 47.6 1.0 O A:HOH637 3.3 24.9 1.0 PB A:ADP503 3.5 17.3 0.5 PA A:ADP503 3.7 26.6 0.5 O1B A:ADP503 3.9 19.7 0.5 CG A:ASP367 3.9 42.8 1.0 O3A A:ADP503 3.9 22.5 0.5 O5' A:ADP503 4.4 30.0 0.5 OD2 A:ASP367 4.6 46.3 1.0 O1A A:ADP503 4.8 24.4 0.5 C5' A:ADP503 4.8 31.0 0.5 O2B A:ADP503 4.8 14.8 0.5 N A:GLY368 4.9 11.3 1.0 CB A:ASP367 5.0 21.1 1.0

Magnesium binding site 2 out of 2 in the Wild Type Eukaryotic Fic Domain Containing Protein with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Wild Type Eukaryotic Fic Domain Containing Protein with Adp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg503 b:46.6 occ:1.00 O1B B:ADP502 1.9 13.5 0.5 O B:HOH653 2.0 26.8 1.0 O B:HOH676 2.3 30.0 1.0 O1A B:ADP502 2.8 14.4 0.5 O2B B:ADP502 2.8 18.4 0.5 OD1 B:ASP367 2.8 49.5 1.0 PB B:ADP502 2.8 15.2 0.5 O3A B:ADP502 3.6 14.3 0.5 PA B:ADP502 3.8 14.6 0.5 NH2 B:ARG371 4.0 3.0 1.0 CG B:ASP367 4.0 46.0 1.0 O B:HOH637 4.1 27.7 1.0 O B:HOH644 4.1 40.8 1.0 O3B B:ADP502 4.2 14.7 0.5 N B:GLY368 4.2 15.3 1.0 O B:HOH626 4.5 16.3 1.0 CD B:GLU234 4.6 36.9 0.2 CG B:GLU234 4.7 38.0 0.2 O B:HOH634 4.7 17.4 1.0 OE1 B:GLU234 4.7 26.5 0.2 OE2 B:GLU234 4.8 18.4 0.2 O5' B:ADP502 4.8 16.7 0.5 CB B:GLU234 4.8 33.0 0.2 OD2 B:ASP367 4.8 54.6 1.0 CB B:ASP367 4.8 23.0 1.0 O2A B:ADP502 4.8 13.1 0.5 CB B:GLU234 4.9 37.0 0.8 CA B:GLY368 4.9 15.3 1.0 NE B:ARG371 4.9 13.7 1.0 CZ B:ARG371 4.9 28.1 1.0 CA B:ASP367 5.0 19.9 1.0

T.D.Bunney, A.R.Cole, M.Broncel, D.Esposito, E.W.Tate, M.Katan. Crystal Structure of the Human, Fic-Domain Containing Protein Hype and Implications For Its Functions. Structure 2014.
ISSN: ISSN 0969-2126
PubMed: 25435325
DOI: 10.1016/J.STR.2014.10.007