Magnesium in PDB 4u5p: Crystal Structure of Native Rhcc (YP_702633.1) From Rhodococcus Jostii RHA1 at 1.78 Angstrom

The structure of Crystal Structure of Native Rhcc (YP_702633.1) From Rhodococcus Jostii RHA1 at 1.78 Angstrom, PDB code: 4u5p was solved by H.Poddar, H.J.Rozeboom, A.M.W.H.Thunnissen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.35 / 1.78
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	54.690, 98.550, 188.530, 90.00, 90.00, 90.00
R / Rfree (%)	15 / 18.7

The binding sites of Magnesium atom in the Crystal Structure of Native Rhcc (YP_702633.1) From Rhodococcus Jostii RHA1 at 1.78 Angstrom (pdb code 4u5p). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Native Rhcc (YP_702633.1) From Rhodococcus Jostii RHA1 at 1.78 Angstrom, PDB code: 4u5p:

Magnesium binding site 1 out of 1 in the Crystal Structure of Native Rhcc (YP_702633.1) From Rhodococcus Jostii RHA1 at 1.78 Angstrom


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Native Rhcc (YP_702633.1) From Rhodococcus Jostii RHA1 at 1.78 Angstrom within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg203 b:8.5 occ:1.00 O A:HOH363 2.1 11.9 1.0 OD2 C:ASP106 2.1 16.1 1.0 O C:HOH689 2.1 13.7 1.0 O B:HOH373 2.1 13.3 1.0 OD2 B:ASP106 2.2 14.4 1.0 OD2 A:ASP106 2.2 16.3 1.0 CG C:ASP106 3.1 16.6 1.0 CG A:ASP106 3.1 16.5 1.0 CG B:ASP106 3.2 17.1 1.0 O A:HOH451 3.4 21.5 1.0 OD1 C:ASP106 3.4 17.1 1.0 OD1 A:ASP106 3.4 18.6 1.0 OD1 B:ASP106 3.5 16.5 1.0 O A:HOH396 3.9 27.9 1.0 O C:HOH697 4.0 24.4 1.0 O B:HOH397 4.1 24.8 1.0 CB C:ASP106 4.5 11.7 1.0 O C:GLU107 4.5 13.2 1.0 CB A:ASP106 4.5 15.2 1.0 O A:GLU107 4.5 15.8 1.0 O B:GLU107 4.5 12.0 1.0 CB B:ASP106 4.6 10.9 1.0 CG2 C:THR108 4.9 16.4 1.0 CG2 B:THR108 4.9 12.6 1.0 CG2 A:THR108 4.9 20.4 1.0

B.J.Baas, H.Poddar, E.M.Geertsema, H.J.Rozeboom, M.P.De Vries, H.P.Permentier, A.M.Thunnissen, G.J.Poelarends. Functional and Structural Characterization of An Unusual Cofactor-Independent Oxygenase. Biochemistry V. 54 1219 2015.
ISSN: ISSN 0006-2960
PubMed: 25565350
DOI: 10.1021/BI501200J