Atomistry » Magnesium » PDB 4tyw-4u9h » 4u8c
Atomistry »
  Magnesium »
    PDB 4tyw-4u9h »
      4u8c »

Magnesium in PDB 4u8c: Crystal Structure of D(Cgcgaattcgcg)2 Complexed with Bph-1409

Protein crystallography data

The structure of Crystal Structure of D(Cgcgaattcgcg)2 Complexed with Bph-1409, PDB code: 4u8c was solved by W.Zhu, E.Oldfield, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 17.07 / 1.24
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 24.793, 39.948, 65.786, 90.00, 90.00, 90.00
R / Rfree (%) 27.6 / 33.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of D(Cgcgaattcgcg)2 Complexed with Bph-1409 (pdb code 4u8c). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of D(Cgcgaattcgcg)2 Complexed with Bph-1409, PDB code: 4u8c:

Magnesium binding site 1 out of 1 in 4u8c

Go back to Magnesium Binding Sites List in 4u8c
Magnesium binding site 1 out of 1 in the Crystal Structure of D(Cgcgaattcgcg)2 Complexed with Bph-1409


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of D(Cgcgaattcgcg)2 Complexed with Bph-1409 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg101

b:19.1
occ:1.00
O A:HOH203 2.0 18.4 1.0
O B:HOH102 2.0 19.9 1.0
O A:HOH211 2.1 19.7 1.0
O A:HOH215 4.0 23.5 1.0
O6 B:DG22 4.1 16.8 1.0
O B:HOH104 4.2 23.1 1.0
C5 A:DC1 4.3 17.2 1.0
O B:HOH107 4.3 21.4 1.0
O6 A:DG2 4.4 16.4 1.0
N7 A:DG2 4.5 16.8 1.0
C6 A:DC1 4.7 18.3 1.0

Reference:

W.Zhu, Y.Wang, K.Li, J.Gao, C.H.Huang, C.C.Chen, T.P.Ko, Y.Zhang, R.T.Guo, E.Oldfield. Antibacterial Drug Leads: Dna and Enzyme Multitargeting. J.Med.Chem. 2015.
ISSN: ISSN 0022-2623
PubMed: 25574764
DOI: 10.1021/JM501449U
Page generated: Tue Aug 12 00:23:20 2025

Last articles

Mg in 5BTF
Mg in 5BTD
Mg in 5BTC
Mg in 5BTA
Mg in 5BON
Mg in 5BSU
Mg in 5BST
Mg in 5BSM
Mg in 5BSK
Mg in 5BS8
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy