Magnesium in PDB 4ueg: Crystal Structure of Human Glycogenin-2 Catalytic Domain

All present enzymatic activity of Crystal Structure of Human Glycogenin-2 Catalytic Domain:
2.4.1.186;

The structure of Crystal Structure of Human Glycogenin-2 Catalytic Domain, PDB code: 4ueg was solved by M.Fairhead, C.Strain-Damerell, T.Krojer, D.S.Froese, J.Kopec, R.Nowak, N.Burgess-Brown, F.Von Delft, C.Arrowsmith, A.Edwards, C.Bountra, W.W.Yue, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	64.608 / 1.93
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	127.113, 80.541, 73.683, 90.00, 118.74, 90.00
R / Rfree (%)	18.67 / 22.43

The binding sites of Magnesium atom in the Crystal Structure of Human Glycogenin-2 Catalytic Domain (pdb code 4ueg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Human Glycogenin-2 Catalytic Domain, PDB code: 4ueg:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Human Glycogenin-2 Catalytic Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human Glycogenin-2 Catalytic Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1270 b:61.3 occ:1.00 O A:HOH2074 2.0 57.8 1.0 OD2 A:ASP106 2.3 36.6 1.0 NE2 A:HIS214 2.4 41.7 1.0 O A:HOH2117 2.5 51.9 1.0 CG A:ASP106 3.0 36.3 1.0 OD1 A:ASP106 3.0 35.4 1.0 CE1 A:HIS214 3.2 42.5 1.0 OD2 A:ASP104 3.4 36.0 1.0 CD2 A:HIS214 3.6 41.0 1.0 O A:HOH2073 4.1 38.6 1.0 NZ A:LYS220 4.2 43.2 1.0 CG A:ASP104 4.3 35.7 1.0 CB A:ASP104 4.3 36.2 1.0 ND1 A:HIS214 4.4 42.3 1.0 CD2 A:LEU216 4.4 53.5 1.0 CB A:ASP106 4.5 38.0 1.0 CG A:HIS214 4.6 41.6 1.0 O A:HOH2096 4.8 46.5 1.0 O A:PHE215 4.8 44.0 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Human Glycogenin-2 Catalytic Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Human Glycogenin-2 Catalytic Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1266 b:67.2 occ:1.00 OD2 B:ASP106 2.6 37.8 1.0 NE2 B:HIS214 2.7 37.3 1.0 OD2 B:ASP104 2.9 37.1 1.0 OD1 B:ASP106 2.9 34.7 1.0 CG B:ASP106 3.1 37.2 1.0 CE1 B:HIS214 3.5 37.7 1.0 CG B:ASP104 3.8 36.2 1.0 CD2 B:HIS214 3.8 37.0 1.0 CB B:ASP104 3.9 35.6 1.0 O B:HOH2060 4.2 50.3 1.0 CD2 B:LEU216 4.3 60.0 1.0 NZ B:LYS220 4.6 42.3 1.0 CB B:ASP106 4.7 38.0 1.0 ND1 B:HIS214 4.7 37.8 1.0 CG B:HIS214 4.9 37.5 1.0 OD1 B:ASP104 4.9 35.4 1.0

M.Fairhead, C.Strain-Damerell, T.Krojer, D.S.Froese, J.Kopec, R.Nowak, N.Burgess-Brown, F.Von Delft, C.Arrowsmith, A.Edwards, C.Bountra, W.W.Yue. Crystal Structure of Human Glycogenin-2 Catalytic Domain To Be Published.