Magnesium in PDB 4uj4: Crystal Structure of Human RAB11-RABIN8-FIP3

The structure of Crystal Structure of Human RAB11-RABIN8-FIP3, PDB code: 4uj4 was solved by M.Vetter, E.Lorentzen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.47 / 4.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	66.120, 161.701, 192.762, 90.00, 90.00, 90.00
R / Rfree (%)	25.2 / 26.6

The binding sites of Magnesium atom in the Crystal Structure of Human RAB11-RABIN8-FIP3 (pdb code 4uj4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of Human RAB11-RABIN8-FIP3, PDB code: 4uj4:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Crystal Structure of Human RAB11-RABIN8-FIP3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human RAB11-RABIN8-FIP3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg201 b:0.5 occ:1.00 OG A:SER25 1.8 0.1 1.0 O3G A:GNP200 1.9 0.8 1.0 O2B A:GNP200 1.9 0.8 1.0 OG1 A:THR43 2.0 0.1 1.0 CB A:SER25 2.9 0.9 1.0 PG A:GNP200 3.0 0.6 1.0 PB A:GNP200 3.1 0.7 1.0 N3B A:GNP200 3.2 0.1 1.0 CB A:THR43 3.4 0.2 1.0 N A:SER25 3.8 0.7 1.0 O2G A:GNP200 3.8 0.4 1.0 O2A A:GNP200 3.9 0.1 1.0 OD2 A:ASP66 3.9 0.3 1.0 N A:THR43 3.9 0.5 1.0 CA A:SER25 3.9 0.5 1.0 O3A A:GNP200 4.1 0.3 1.0 OD1 A:ASP66 4.2 0.7 1.0 O1B A:GNP200 4.2 0.4 1.0 CA A:THR43 4.2 0.0 1.0 CG2 A:THR43 4.2 0.7 1.0 O1G A:GNP200 4.3 0.9 1.0 PA A:GNP200 4.3 0.0 1.0 O A:LYS41 4.5 0.3 1.0 CG A:ASP66 4.5 0.6 1.0 O1A A:GNP200 4.5 0.9 1.0 O A:THR67 4.7 0.9 1.0 C A:SER42 4.8 0.2 1.0 C A:LYS24 5.0 1.0 1.0

Magnesium binding site 2 out of 4 in the Crystal Structure of Human RAB11-RABIN8-FIP3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Human RAB11-RABIN8-FIP3 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg201 b:0.0 occ:1.00 OG D:SER25 1.9 0.4 1.0 O3G D:GNP200 1.9 0.4 1.0 OG1 D:THR43 2.1 0.7 1.0 O2B D:GNP200 2.2 0.4 1.0 PG D:GNP200 3.0 0.9 1.0 CB D:SER25 3.1 0.6 1.0 CB D:THR43 3.2 0.9 1.0 OD1 D:ASP66 3.2 0.4 1.0 PB D:GNP200 3.3 0.1 1.0 O2G D:GNP200 3.3 0.5 1.0 OD2 D:ASP66 3.4 0.5 1.0 N3B D:GNP200 3.5 0.3 1.0 N D:SER25 3.6 0.4 1.0 CG D:ASP66 3.7 0.5 1.0 CA D:SER25 3.8 0.4 1.0 O D:THR67 3.8 0.7 1.0 O1B D:GNP200 3.9 0.5 1.0 CG2 D:THR43 4.0 0.2 1.0 N D:THR43 4.3 0.6 1.0 O1G D:GNP200 4.3 0.5 1.0 CA D:THR43 4.4 0.1 1.0 CB D:LYS24 4.4 0.6 1.0 O3A D:GNP200 4.5 0.0 1.0 C D:THR67 4.6 0.5 1.0 CE D:LYS24 4.6 0.2 1.0 C D:LYS24 4.6 0.4 1.0 O2A D:GNP200 4.8 0.7 1.0 O1A D:GNP200 4.9 0.6 1.0 PA D:GNP200 4.9 0.7 1.0 NZ D:LYS24 5.0 0.6 1.0 CA D:LYS24 5.0 0.8 1.0

Magnesium binding site 3 out of 4 in the Crystal Structure of Human RAB11-RABIN8-FIP3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Human RAB11-RABIN8-FIP3 within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg201 b:0.0 occ:1.00 OG G:SER25 2.0 0.8 1.0 OG1 G:THR43 2.2 0.5 1.0 O2B G:GNP200 2.2 0.1 1.0 O3G G:GNP200 2.4 1.0 1.0 PG G:GNP200 3.2 0.8 1.0 O2G G:GNP200 3.2 1.0 1.0 CB G:THR43 3.3 0.0 1.0 OD1 G:ASP66 3.3 0.8 1.0 CB G:SER25 3.3 0.0 1.0 PB G:GNP200 3.4 0.5 1.0 O G:THR67 3.5 0.6 1.0 OD2 G:ASP66 3.5 0.5 1.0 N G:SER25 3.6 0.9 1.0 N3B G:GNP200 3.7 0.3 1.0 CG G:ASP66 3.8 0.8 1.0 O1B G:GNP200 3.9 0.2 1.0 CA G:SER25 3.9 0.9 1.0 CG2 G:THR43 4.0 0.6 1.0 CB G:LYS24 4.2 0.4 1.0 CE G:LYS24 4.3 0.2 1.0 C G:THR67 4.4 0.5 1.0 O2A G:GNP200 4.4 0.0 1.0 N G:THR43 4.5 0.6 1.0 CA G:THR43 4.5 0.6 1.0 O1G G:GNP200 4.5 0.0 1.0 C G:LYS24 4.6 0.3 1.0 O3A G:GNP200 4.6 0.7 1.0 NZ G:LYS24 4.8 0.8 1.0 N G:GLY69 4.8 0.1 1.0 CA G:LYS24 4.9 0.8 1.0 PA G:GNP200 5.0 0.2 1.0 N G:THR67 5.0 0.8 1.0

Magnesium binding site 4 out of 4 in the Crystal Structure of Human RAB11-RABIN8-FIP3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Human RAB11-RABIN8-FIP3 within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg201 b:0.3 occ:1.00 O3G J:GNP200 2.0 0.1 1.0 OG1 J:THR43 2.0 1.0 1.0 OG J:SER25 2.2 0.3 1.0 O2B J:GNP200 2.6 0.2 1.0 CB J:THR43 2.9 1.0 1.0 PG J:GNP200 3.1 0.2 1.0 OD1 J:ASP66 3.3 0.2 1.0 OD2 J:ASP66 3.5 0.1 1.0 O2G J:GNP200 3.5 0.7 1.0 CB J:SER25 3.5 0.2 1.0 O J:THR67 3.6 0.4 1.0 PB J:GNP200 3.6 0.9 1.0 CG2 J:THR43 3.6 0.1 1.0 N3B J:GNP200 3.8 0.0 1.0 CG J:ASP66 3.8 0.5 1.0 N J:SER25 3.9 0.1 1.0 CA J:SER25 4.1 0.1 1.0 C J:THR67 4.2 0.6 1.0 CA J:THR43 4.2 0.6 1.0 O1B J:GNP200 4.2 0.3 1.0 N J:THR43 4.2 0.7 1.0 CE J:LYS24 4.3 0.7 1.0 O1G J:GNP200 4.4 0.1 1.0 CB J:LYS24 4.5 0.1 1.0 CA J:ALA68 4.6 0.4 1.0 N J:ALA68 4.7 0.4 1.0 NZ J:LYS24 4.7 0.3 1.0 O2A J:GNP200 4.8 0.9 1.0 N J:THR67 4.9 0.6 1.0 C J:LYS24 4.9 0.5 1.0 O3A J:GNP200 4.9 0.6 1.0 N J:GLY69 5.0 0.4 1.0

M.Vetter, R.Stehle, C.Basquin, E.Lorentzen. Structure of RAB11-FIP3-RABIN8 Reveals Simultaneous Binding of FIP3 and RABIN8 Effectors to RAB11. Nat. Struct. Mol. Biol. V. 22 695 2015.
ISSN: ESSN 1545-9985
PubMed: 26258637
DOI: 10.1038/NSMB.3065