Magnesium in PDB 4uj5: Crystal Structure of Human RAB11-RABIN8-FIP3

The structure of Crystal Structure of Human RAB11-RABIN8-FIP3, PDB code: 4uj5 was solved by M.Vetter, E.Lorentzen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.642 / 2.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	51.683, 108.202, 75.736, 90.00, 102.83, 90.00
R / Rfree (%)	21.46 / 27.16

The binding sites of Magnesium atom in the Crystal Structure of Human RAB11-RABIN8-FIP3 (pdb code 4uj5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Human RAB11-RABIN8-FIP3, PDB code: 4uj5:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Human RAB11-RABIN8-FIP3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human RAB11-RABIN8-FIP3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg202 b:78.1 occ:1.00 O3G A:GNP201 2.0 69.4 1.0 O2B A:GNP201 2.0 76.5 1.0 OG1 A:THR43 2.0 79.1 1.0 OG A:SER25 2.1 66.8 1.0 O A:HOH2007 2.2 86.0 1.0 O A:HOH2006 2.3 65.7 1.0 CB A:SER25 3.1 67.1 1.0 CB A:THR43 3.2 83.9 1.0 PB A:GNP201 3.2 71.0 1.0 PG A:GNP201 3.2 88.0 1.0 N3B A:GNP201 3.5 75.7 1.0 OD2 A:ASP66 3.7 85.8 1.0 N A:THR43 3.8 85.4 1.0 CA A:THR43 4.0 90.0 1.0 N A:SER25 4.1 74.7 1.0 O2G A:GNP201 4.1 93.3 1.0 O2A A:GNP201 4.1 59.5 1.0 O1B A:GNP201 4.2 76.2 1.0 CA A:SER25 4.2 75.7 1.0 O3A A:GNP201 4.3 74.0 1.0 OD1 A:ASP66 4.3 86.2 1.0 CG2 A:THR43 4.3 82.2 1.0 O1G A:GNP201 4.4 78.2 1.0 CG A:ASP66 4.4 83.0 1.0 PA A:GNP201 4.5 69.3 1.0 O1A A:GNP201 4.6 58.6 1.0 O A:LYS41 4.7 86.5 1.0 C A:SER42 4.8 84.8 1.0 O A:THR67 4.8 90.8 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Human RAB11-RABIN8-FIP3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Human RAB11-RABIN8-FIP3 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg202 b:73.9 occ:1.00 OG B:SER25 1.9 76.1 1.0 O B:HOH2007 2.0 93.7 1.0 O B:HOH2006 2.3 69.1 1.0 O2B B:GNP201 2.5 71.3 1.0 O3G B:GNP201 2.5 86.9 1.0 OG1 B:THR43 2.6 84.0 1.0 CB B:SER25 2.7 70.5 1.0 N3B B:GNP201 3.1 94.3 1.0 PG B:GNP201 3.1 90.3 1.0 O2G B:GNP201 3.3 82.5 1.0 PB B:GNP201 3.4 68.3 1.0 CB B:THR43 3.7 92.7 1.0 O2A B:GNP201 3.7 82.6 1.0 OD2 B:ASP66 3.8 74.1 1.0 CA B:SER25 3.8 67.2 1.0 N B:SER25 3.8 59.4 1.0 N B:THR43 3.9 0.3 1.0 PA B:GNP201 4.2 72.5 1.0 O1A B:GNP201 4.3 72.3 1.0 O3A B:GNP201 4.3 65.8 1.0 CA B:THR43 4.3 0.7 1.0 O B:LYS41 4.4 89.0 1.0 OD1 B:ASP66 4.5 80.8 1.0 O1B B:GNP201 4.6 66.9 1.0 CG B:ASP66 4.6 86.0 1.0 O1G B:GNP201 4.6 84.6 1.0 C B:SER42 4.7 0.1 1.0 CA B:SER42 4.8 83.8 1.0 CG2 B:THR43 4.9 83.0 1.0

M.Vetter, R.Stehle, C.Basquin, E.Lorentzen. Structure of RAB11-FIP3-RABIN8 Reveals Simultaneous Binding of FIP3 and RABIN8 Effectors to RAB11. Nat.Struct.Mol.Biol. V. 22 695 2015.
ISSN: ISSN 1545-9993
PubMed: 26258637
DOI: 10.1038/NSMB.3065