Magnesium in PDB 4uqo: Rada C-Terminal Atpase Domain From Pyrococcus Furiosus Bound to Adp

The structure of Rada C-Terminal Atpase Domain From Pyrococcus Furiosus Bound to Adp, PDB code: 4uqo was solved by M.E.Marsh, M.T.Ehebauer, D.Scott, C.Abell, T.L.Blundell, M.Hyvonen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	62.32 / 1.88
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	40.308, 87.130, 62.322, 90.00, 90.55, 90.00
R / Rfree (%)	17.124 / 23.14

The structure of Rada C-Terminal Atpase Domain From Pyrococcus Furiosus Bound to Adp also contains other interesting chemical elements:

Sodium

(Na)

3 atoms

The binding sites of Magnesium atom in the Rada C-Terminal Atpase Domain From Pyrococcus Furiosus Bound to Adp (pdb code 4uqo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Rada C-Terminal Atpase Domain From Pyrococcus Furiosus Bound to Adp, PDB code: 4uqo:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Rada C-Terminal Atpase Domain From Pyrococcus Furiosus Bound to Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Rada C-Terminal Atpase Domain From Pyrococcus Furiosus Bound to Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1351 b:10.7 occ:1.00 O A:HOH2042 2.0 11.3 1.0 OG1 A:THR145 2.0 13.7 1.0 O3B A:ADP1350 2.0 14.1 1.0 O A:HOH2041 2.1 16.9 1.0 O A:HOH2043 2.1 14.6 1.0 O A:HOH2218 2.1 14.7 1.0 CB A:THR145 3.0 15.8 1.0 PB A:ADP1350 3.2 17.4 1.0 O1B A:ADP1350 3.6 13.5 1.0 O1A A:ADP1350 3.9 17.8 1.0 N A:THR145 3.9 14.7 1.0 O A:HOH2086 4.0 19.7 1.0 CG2 A:THR145 4.1 14.9 1.0 OD1 A:ASP238 4.1 15.0 1.0 CA A:THR145 4.1 14.4 1.0 OD2 A:ASP238 4.1 12.6 1.0 OG1 A:THR176 4.3 17.2 1.0 O3A A:ADP1350 4.3 14.9 1.0 O A:HOH2087 4.3 21.7 1.0 O A:HOH2057 4.3 20.1 1.0 O2B A:ADP1350 4.3 16.4 1.0 PA A:ADP1350 4.5 16.3 1.0 CG A:ASP238 4.5 14.4 1.0 OE1 A:GLU174 4.6 32.2 1.0 O A:HOH2256 4.6 21.8 1.0 O2A A:ADP1350 4.6 14.9 1.0 CB A:THR176 4.8 17.5 1.0 CG2 A:THR176 4.8 18.0 1.0 OE1 A:GLN284 4.8 22.1 1.0 CB A:LYS144 4.8 14.5 1.0 C A:LYS144 5.0 13.7 1.0

Magnesium binding site 2 out of 2 in the Rada C-Terminal Atpase Domain From Pyrococcus Furiosus Bound to Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Rada C-Terminal Atpase Domain From Pyrococcus Furiosus Bound to Adp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1351 b:8.3 occ:1.00 O B:HOH2195 2.0 10.6 1.0 O B:HOH2041 2.0 10.1 1.0 O B:HOH2042 2.0 12.9 1.0 O B:HOH2043 2.1 12.3 1.0 O3B B:ADP1350 2.1 12.8 1.0 OG1 B:THR145 2.1 14.5 1.0 CB B:THR145 3.1 15.3 1.0 PB B:ADP1350 3.3 17.5 1.0 O1B B:ADP1350 3.5 15.1 1.0 O1A B:ADP1350 3.9 15.8 1.0 O B:HOH2079 4.1 17.1 1.0 N B:THR145 4.1 13.5 1.0 O B:HOH2080 4.1 24.7 1.0 CG2 B:THR145 4.1 15.8 1.0 O B:HOH2056 4.1 16.1 1.0 OD1 B:ASP238 4.2 11.7 1.0 CA B:THR145 4.2 14.3 1.0 OD2 B:ASP238 4.2 13.7 1.0 OG1 B:THR176 4.2 16.3 1.0 O3A B:ADP1350 4.3 14.3 1.0 O2B B:ADP1350 4.4 14.2 1.0 O B:HOH2233 4.4 16.3 1.0 OE1 B:GLU174 4.5 33.1 1.0 PA B:ADP1350 4.5 16.1 1.0 O2A B:ADP1350 4.6 11.6 1.0 CG B:ASP238 4.6 13.6 1.0 CB B:THR176 4.7 18.5 1.0 CG2 B:THR176 4.8 18.8 1.0 OE1 B:GLN284 4.9 18.4 1.0

M.E.Marsh, M.T.Ehebauer, D.Scott, C.Abell, T.L.Blundell, M.Hyvonen. Pyrococcus Furiosus Rada Atp-Half Site Binds Nucleotides To Be Published.