Atomistry » Magnesium » PDB 4um5-4uuw » 4urf
Atomistry »
  Magnesium »
    PDB 4um5-4uuw »
      4urf »

Magnesium in PDB 4urf: Molecular Genetic and Crystal Structural Analysis of 1-(4- Hydroxyphenyl)-Ethanol Dehydrogenase From Aromatoleum Aromaticum EBN1

Enzymatic activity of Molecular Genetic and Crystal Structural Analysis of 1-(4- Hydroxyphenyl)-Ethanol Dehydrogenase From Aromatoleum Aromaticum EBN1

All present enzymatic activity of Molecular Genetic and Crystal Structural Analysis of 1-(4- Hydroxyphenyl)-Ethanol Dehydrogenase From Aromatoleum Aromaticum EBN1:
1.1.1.311;

Protein crystallography data

The structure of Molecular Genetic and Crystal Structural Analysis of 1-(4- Hydroxyphenyl)-Ethanol Dehydrogenase From Aromatoleum Aromaticum EBN1, PDB code: 4urf was solved by I.Buesing, H.W.Hoeffken, M.Breuer, L.Woehlbrand, B.Hauer, R.Rabus, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.77 / 1.10
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 121.500, 55.100, 86.300, 90.00, 134.40, 90.00
R / Rfree (%) 10.9 / 13.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Molecular Genetic and Crystal Structural Analysis of 1-(4- Hydroxyphenyl)-Ethanol Dehydrogenase From Aromatoleum Aromaticum EBN1 (pdb code 4urf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Molecular Genetic and Crystal Structural Analysis of 1-(4- Hydroxyphenyl)-Ethanol Dehydrogenase From Aromatoleum Aromaticum EBN1, PDB code: 4urf:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 4urf

Go back to Magnesium Binding Sites List in 4urf
Magnesium binding site 1 out of 5 in the Molecular Genetic and Crystal Structural Analysis of 1-(4- Hydroxyphenyl)-Ethanol Dehydrogenase From Aromatoleum Aromaticum EBN1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Molecular Genetic and Crystal Structural Analysis of 1-(4- Hydroxyphenyl)-Ethanol Dehydrogenase From Aromatoleum Aromaticum EBN1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1254

b:5.9
occ:0.50
 OXT A:ARG248 2.1 6.8 1.0
O A:HOH2259 2.1 7.3 0.5
O A:HOH2261 2.1 8.0 1.0
O A:HOH2265 2.1 6.4 0.5
C A:ARG248 3.1 6.6 1.0
O A:ARG248 3.4 6.3 1.0
O A:HOH2262 4.3 13.1 1.0
O A:HOH2256 4.3 7.0 0.5
CA A:ARG248 4.4 7.2 1.0
O A:TYR245 4.4 5.6 1.0
O A:LEU246 4.6 7.7 1.0
CG2 A:ILE147 4.7 5.8 1.0
CG A:ARG248 4.7 11.1 1.0
N A:ARG248 4.7 6.1 1.0
O A:HOH2218 4.9 8.2 1.0
C A:LEU246 5.0 5.6 1.0

Magnesium binding site 2 out of 5 in 4urf

Go back to Magnesium Binding Sites List in 4urf
Magnesium binding site 2 out of 5 in the Molecular Genetic and Crystal Structural Analysis of 1-(4- Hydroxyphenyl)-Ethanol Dehydrogenase From Aromatoleum Aromaticum EBN1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Molecular Genetic and Crystal Structural Analysis of 1-(4- Hydroxyphenyl)-Ethanol Dehydrogenase From Aromatoleum Aromaticum EBN1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1255

b:12.6
occ:0.50
 O A:HOH2166 2.0 26.5 1.0
O A:HOH2165 2.1 34.0 1.0
O A:HOH2112 2.1 33.6 1.0
O A:HOH2164 2.1 32.4 1.0
O A:HOH2273 2.2 27.5 1.0
OE1 A:GLU131 2.2 28.1 1.0
CD A:GLU131 3.3 35.9 1.0
O A:HOH2122 4.0 23.3 1.0
CG A:GLU131 4.0 17.6 1.0
CB A:GLU131 4.1 15.8 1.0
OE2 A:GLU131 4.2 34.6 1.0
O A:HOH2121 4.5 25.6 1.0
NZ A:LYS77 4.5 38.0 1.0
CE A:LYS77 4.6 32.6 1.0

Magnesium binding site 3 out of 5 in 4urf

Go back to Magnesium Binding Sites List in 4urf
Magnesium binding site 3 out of 5 in the Molecular Genetic and Crystal Structural Analysis of 1-(4- Hydroxyphenyl)-Ethanol Dehydrogenase From Aromatoleum Aromaticum EBN1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Molecular Genetic and Crystal Structural Analysis of 1-(4- Hydroxyphenyl)-Ethanol Dehydrogenase From Aromatoleum Aromaticum EBN1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1256

b:20.4
occ:0.50
 O A:HOH2274 1.6 14.7 1.0
O A:HOH2246 1.9 12.8 1.0
O A:HOH2248 2.6 12.0 1.0
O A:HOH2245 3.0 12.0 1.0
N A:TYR238 3.1 5.3 1.0
CB A:SER237 3.4 6.8 1.0
CA A:SER237 3.4 5.2 1.0
O A:TYR238 3.5 6.1 1.0
O A:HOH2249 3.7 25.4 1.0
OG A:SER237 3.7 10.2 1.0
C A:SER237 3.8 4.7 1.0
O A:HOH2244 4.0 14.3 1.0
O A:HOH2190 4.0 16.1 1.0
CA A:TYR238 4.0 5.0 1.0
CB B:ALA240 4.1 7.5 1.0
C A:TYR238 4.2 4.3 1.0
CB A:TYR238 4.3 5.7 1.0
O A:HOH2243 4.4 14.5 1.0
O A:HOH2173 4.4 28.2 1.0
N A:SER237 4.8 4.7 1.0
O A:HOH2127 4.8 33.0 1.0
O A:HOH2078 4.9 34.0 1.0
N B:ALA240 4.9 5.6 1.0
O A:GLY236 4.9 7.0 1.0
O A:SER237 5.0 6.3 1.0

Magnesium binding site 4 out of 5 in 4urf

Go back to Magnesium Binding Sites List in 4urf
Magnesium binding site 4 out of 5 in the Molecular Genetic and Crystal Structural Analysis of 1-(4- Hydroxyphenyl)-Ethanol Dehydrogenase From Aromatoleum Aromaticum EBN1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Molecular Genetic and Crystal Structural Analysis of 1-(4- Hydroxyphenyl)-Ethanol Dehydrogenase From Aromatoleum Aromaticum EBN1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1257

b:15.2
occ:0.50
 O A:HOH2276 2.0 17.7 1.0
O A:HOH2060 2.1 26.7 1.0
O A:HOH2061 2.1 14.1 1.0
O A:HOH2275 2.2 26.4 1.0
O A:HOH2062 2.4 40.2 1.0
O A:HOH2069 2.7 30.8 1.0
NE1 A:TRP41 3.8 12.8 1.0
O A:HOH2057 3.9 34.7 1.0
OE1 A:GLU44 4.3 10.9 1.0
CD1 A:TRP41 4.3 11.3 1.0
O A:HOH2021 4.6 10.0 1.0
OE2 A:GLU44 4.7 13.8 1.0
CD A:GLU44 4.9 9.7 1.0
O A:HOH2024 4.9 19.4 1.0
CE2 A:TRP41 4.9 10.7 1.0

Magnesium binding site 5 out of 5 in 4urf

Go back to Magnesium Binding Sites List in 4urf
Magnesium binding site 5 out of 5 in the Molecular Genetic and Crystal Structural Analysis of 1-(4- Hydroxyphenyl)-Ethanol Dehydrogenase From Aromatoleum Aromaticum EBN1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Molecular Genetic and Crystal Structural Analysis of 1-(4- Hydroxyphenyl)-Ethanol Dehydrogenase From Aromatoleum Aromaticum EBN1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1254

b:6.4
occ:0.50
 O B:HOH2200 2.0 8.0 1.0
OXT B:ARG248 2.1 7.2 1.0
O B:HOH2205 2.1 6.0 0.5
O B:HOH2201 2.1 8.0 0.5
C B:ARG248 3.0 6.1 1.0
O B:ARG248 3.4 6.6 1.0
O B:HOH2204 4.3 13.9 1.0
O B:HOH2198 4.4 7.4 0.5
CA B:ARG248 4.4 7.5 1.0
O B:TYR245 4.5 5.8 1.0
O B:LEU246 4.6 8.5 1.0
CG B:ARG248 4.6 10.2 1.0
N B:ARG248 4.7 6.1 1.0
CG2 B:ILE147 4.7 6.5 1.0
C B:LEU246 4.9 5.8 1.0
O B:HOH2186 5.0 8.6 1.0

Reference:

I.Busing, H.W.Hoffken, M.Breuer, L.Wohlbrand, B.Hauer, R.Rabus. Molecular Genetic and Crystal Structural Analysis of 1-(4-Hydroxyphenyl)-Ethanol Dehydrogenase From 'Aromatoleum Aromaticum' EBN1. J.Mol.Microbiol.Biotechnol. V. 25 327 2015.
ISSN: ISSN 1464-1801
PubMed: 26488297
DOI: 10.1159/000439113
Page generated: Tue Aug 20 04:56:52 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy