Magnesium in PDB 4uux: Competence or Damage-Inducible Protein Cina From Thermus Thermophilus

The structure of Competence or Damage-Inducible Protein Cina From Thermus Thermophilus, PDB code: 4uux was solved by J.Derrick, V.Karuppiah, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.93 / 1.99
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	73.390, 94.030, 132.380, 90.00, 90.00, 90.00
R / Rfree (%)	17.559 / 21.254

The binding sites of Magnesium atom in the Competence or Damage-Inducible Protein Cina From Thermus Thermophilus (pdb code 4uux). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Competence or Damage-Inducible Protein Cina From Thermus Thermophilus, PDB code: 4uux:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Competence or Damage-Inducible Protein Cina From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Competence or Damage-Inducible Protein Cina From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:37.1 occ:1.00 O2A A:APR400 2.2 30.1 1.0 OD1 A:ASP76 2.3 33.3 1.0 O A:HOH2066 2.3 29.7 1.0 O2B A:APR400 2.3 26.3 1.0 O A:HOH2046 3.1 45.1 1.0 CG A:ASP76 3.2 35.5 1.0 PA A:APR400 3.3 33.0 1.0 OD2 A:ASP76 3.5 34.4 1.0 PB A:APR400 3.6 31.1 1.0 O1A A:APR400 3.7 30.3 1.0 O3A A:APR400 3.9 33.6 1.0 CA A:GLY69 4.1 29.5 1.0 N A:GLY71 4.2 27.5 1.0 N A:GLY69 4.3 28.6 1.0 O5D A:APR400 4.3 31.5 1.0 CA A:GLY71 4.3 34.1 1.0 C5D A:APR400 4.4 39.2 1.0 CB A:ASP76 4.6 32.4 1.0 C A:GLY69 4.7 29.8 1.0 O5' A:APR400 4.7 31.4 1.0 N A:LEU70 4.8 25.4 1.0 O1B A:APR400 4.8 30.4 1.0

Magnesium binding site 2 out of 2 in the Competence or Damage-Inducible Protein Cina From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Competence or Damage-Inducible Protein Cina From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:31.8 occ:1.00 O2A B:APR400 2.2 26.2 1.0 O2B B:APR400 2.2 22.1 1.0 OD1 B:ASP76 2.3 29.3 1.0 O A:HOH2125 2.4 34.0 1.0 O A:HOH2126 2.5 38.8 1.0 CG B:ASP76 3.0 33.2 1.0 OD2 B:ASP76 3.1 34.8 1.0 PB B:APR400 3.3 25.8 1.0 PA B:APR400 3.4 27.5 1.0 O B:HOH2031 3.6 34.5 1.0 O3A B:APR400 3.7 29.1 1.0 C5D B:APR400 3.8 41.9 1.0 CA B:GLY71 3.9 27.6 1.0 N B:GLY71 3.9 27.0 1.0 O5D B:APR400 3.9 30.9 1.0 O1A B:APR400 4.0 30.0 1.0 OE1 A:GLU187 4.3 41.4 1.0 OE2 A:GLU187 4.4 38.7 1.0 CB B:ASP76 4.4 26.6 1.0 CA B:GLY69 4.5 22.3 1.0 O1B B:APR400 4.6 23.6 1.0 CD A:PRO210 4.6 31.7 1.0 OD1 B:ASP75 4.6 45.0 1.0 O B:HOH2030 4.6 36.2 1.0 CG A:PRO210 4.6 31.5 1.0 N B:GLY69 4.6 20.8 1.0 O5' B:APR400 4.7 32.1 1.0 CD A:GLU187 4.8 36.1 1.0 N B:LEU70 4.9 21.2 1.0 C B:GLY69 4.9 24.1 1.0 C B:GLY71 4.9 26.4 1.0 C4D B:APR400 5.0 36.4 1.0

V.Karuppiah, A.Thistlethwaite, R.Dajani, J.Warwicker, J.P.Derrick. Structure and Mechanism of the Bifunctional Cina Enzyme From Thermus Thermophilus J.Biol.Chem. 201410.1074/Jbc.M114.608448.
ISSN: ESSN 1083-351X
PubMed: 25313401