Magnesium in PDB 4wc2: Crystal Structure of Trna Nucleotidyltransferase Complexed with A Primer Trna and An Incoming Atp Analog

The structure of Crystal Structure of Trna Nucleotidyltransferase Complexed with A Primer Trna and An Incoming Atp Analog, PDB code: 4wc2 was solved by S.Yamashita, K.Tomita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.80 / 2.80
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	58.920, 109.480, 125.900, 90.00, 90.00, 90.00
R / Rfree (%)	21.5 / 26.7

The binding sites of Magnesium atom in the Crystal Structure of Trna Nucleotidyltransferase Complexed with A Primer Trna and An Incoming Atp Analog (pdb code 4wc2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Trna Nucleotidyltransferase Complexed with A Primer Trna and An Incoming Atp Analog, PDB code: 4wc2:

Magnesium binding site 1 out of 1 in the Crystal Structure of Trna Nucleotidyltransferase Complexed with A Primer Trna and An Incoming Atp Analog


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Trna Nucleotidyltransferase Complexed with A Primer Trna and An Incoming Atp Analog within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:98.0 occ:1.00 O1G A:APC401 2.0 0.1 1.0 O1A A:APC401 2.3 1.0 1.0 O2B A:APC401 2.9 0.0 1.0 PG A:APC401 3.3 0.8 1.0 O2G A:APC401 3.8 0.6 1.0 PA A:APC401 3.8 0.0 1.0 PB A:APC401 3.8 0.5 1.0 O3B A:APC401 3.9 0.7 1.0 C3A A:APC401 4.4 95.3 1.0 O3G A:APC401 4.5 0.3 1.0 O5' A:APC401 4.7 91.3 1.0 O2A A:APC401 4.8 92.9 1.0 C5' A:APC401 5.0 96.9 1.0

S.Yamashita, A.Martinez, K.Tomita. Measurement of Acceptor-T Psi C Helix Length of Trna For Terminal A76-Addition By A-Adding Enzyme. Structure V. 23 830 2015.
ISSN: ISSN 0969-2126
PubMed: 25914059
DOI: 10.1016/J.STR.2015.03.013