Magnesium in PDB 4wfl: Structure of the Complete Bacterial Srp Alu Domain

The structure of Structure of the Complete Bacterial Srp Alu Domain, PDB code: 4wfl was solved by G.Kempf, K.Wild, I.Sinning, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.50 / 2.49
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	62.466, 68.283, 82.991, 90.00, 90.00, 90.00
R / Rfree (%)	18 / 20.9

The structure of Structure of the Complete Bacterial Srp Alu Domain also contains other interesting chemical elements:

Cobalt

(Co)

15 atoms

The binding sites of Magnesium atom in the Structure of the Complete Bacterial Srp Alu Domain (pdb code 4wfl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Structure of the Complete Bacterial Srp Alu Domain, PDB code: 4wfl:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Structure of the Complete Bacterial Srp Alu Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Complete Bacterial Srp Alu Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg201 b:36.2 occ:1.00 O1G A:GTP3 2.0 56.0 1.0 O A:HOH308 2.0 21.9 1.0 O A:HOH305 2.2 37.0 1.0 O3A A:GTP3 2.4 50.1 1.0 O1A A:GTP3 2.7 40.8 1.0 PA A:GTP3 3.1 40.2 1.0 PG A:GTP3 3.2 55.9 1.0 PB A:GTP3 3.3 51.6 1.0 O1B A:GTP3 3.4 51.1 1.0 O3B A:GTP3 3.5 97.0 1.0 O3G A:GTP3 3.7 55.0 1.0 O2A A:GTP3 4.1 38.3 1.0 O5' A:GTP3 4.3 55.2 1.0 O2G A:GTP3 4.4 56.2 1.0 N7 A:GTP3 4.5 52.2 1.0 C8 A:GTP3 4.5 52.0 1.0 N5 A:NCO212 4.5 90.6 0.8 O2B A:GTP3 4.7 52.2 1.0

Magnesium binding site 2 out of 3 in the Structure of the Complete Bacterial Srp Alu Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the Complete Bacterial Srp Alu Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg204 b:63.7 occ:0.94 O A:HOH310 2.2 77.7 0.9 O A:HOH314 2.2 51.1 0.9 O A:HOH309 2.2 31.2 0.9 O A:HOH313 2.2 69.3 0.9 O A:HOH311 2.2 57.3 0.9 O A:HOH312 2.2 44.6 0.9 O4 A:U78 3.9 36.9 1.0 O A:HOH339 4.4 45.9 1.0 N6 A:A89 4.4 37.1 1.0 N7 A:G77 4.7 35.4 1.0 O6 A:G77 4.9 35.9 1.0 O6 A:G76 4.9 33.5 1.0

Magnesium binding site 3 out of 3 in the Structure of the Complete Bacterial Srp Alu Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of the Complete Bacterial Srp Alu Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg210 b:59.9 occ:1.00 O A:HOH320 2.2 62.8 1.0 O A:HOH316 2.2 76.1 1.0 O A:HOH315 2.2 50.6 1.0 O A:HOH317 2.2 68.8 1.0 O A:HOH318 2.2 87.5 1.0 O A:HOH319 2.2 82.8 1.0 O A:HOH338 3.8 34.0 1.0 O4 A:U8 4.2 35.2 1.0 O6 A:G9 4.4 31.3 1.0 OP2 A:A63 4.6 36.5 1.0 N7 A:G9 4.6 32.8 1.0 C4 A:U8 4.8 38.1 1.0 C5 A:U8 4.9 40.8 1.0

G.Kempf, K.Wild, I.Sinning. Structure of the Complete Bacterial Srp Alu Domain. Nucleic Acids Res. V. 42 12284 2014.
ISSN: ESSN 1362-4962
PubMed: 25270875
DOI: 10.1093/NAR/GKU883