Magnesium in PDB 4wnr: Structure of Methanosarcina Barkeri ROCO2 Roccordc Bound to Gdp

The structure of Structure of Methanosarcina Barkeri ROCO2 Roccordc Bound to Gdp, PDB code: 4wnr was solved by S.Terheyden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.06 / 2.90
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	109.360, 109.360, 223.100, 90.00, 90.00, 120.00
R / Rfree (%)	24 / 26.9

The binding sites of Magnesium atom in the Structure of Methanosarcina Barkeri ROCO2 Roccordc Bound to Gdp (pdb code 4wnr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Methanosarcina Barkeri ROCO2 Roccordc Bound to Gdp, PDB code: 4wnr:

Magnesium binding site 1 out of 1 in the Structure of Methanosarcina Barkeri ROCO2 Roccordc Bound to Gdp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Methanosarcina Barkeri ROCO2 Roccordc Bound to Gdp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg702 b:54.3 occ:1.00 O A:HOH808 2.1 66.4 1.0 O A:HOH806 2.1 70.9 1.0 O2B A:GDP701 2.3 66.7 1.0 O A:HOH807 2.5 59.5 1.0 OG1 A:THR335 2.5 64.5 1.0 PB A:GDP701 3.0 66.4 1.0 O3A A:GDP701 3.2 68.8 1.0 O3B A:GDP701 3.3 68.1 1.0 OE1 A:GLN354 3.8 74.5 1.0 CB A:THR335 3.8 65.4 1.0 O A:THR353 3.9 76.2 1.0 O A:PHE377 4.1 64.8 1.0 NE2 A:GLN354 4.2 73.2 1.0 CA A:GLY378 4.3 67.5 1.0 CD A:GLN354 4.3 74.2 1.0 OD2 A:ASP376 4.5 67.9 1.0 O1B A:GDP701 4.5 65.5 1.0 N A:THR335 4.6 65.4 1.0 CG2 A:THR335 4.7 64.1 1.0 PA A:GDP701 4.7 67.0 1.0 CA A:THR335 4.8 65.5 1.0 C A:GLY378 4.8 68.3 1.0 N A:GLY379 4.8 70.2 1.0 C A:PHE377 4.9 65.4 1.0 N A:GLY378 5.0 66.5 1.0

S.Terheyden, F.Y.Ho, B.K.Gilsbach, A.Wittinghofer, A.Kortholt. Revisiting the Roco G Protein Cycle. Biochem.J. 2014.
ISSN: ESSN 1470-8728
PubMed: 25317655
DOI: 10.1042/BJ20141095