Magnesium in PDB 4ww9: Crystal Structure of Binary Complex BUD32-CGI121 in Complex with Adp

All present enzymatic activity of Crystal Structure of Binary Complex BUD32-CGI121 in Complex with Adp:
2.7.11.1;

The structure of Crystal Structure of Binary Complex BUD32-CGI121 in Complex with Adp, PDB code: 4ww9 was solved by W.Zhang, H.Van Tilbeurgh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.74 / 1.95
Space group	I 41
Cell size a, b, c (Å), α, β, γ (°)	113.010, 113.010, 86.350, 90.00, 90.00, 90.00
R / Rfree (%)	17.9 / 20.9

The binding sites of Magnesium atom in the Crystal Structure of Binary Complex BUD32-CGI121 in Complex with Adp (pdb code 4ww9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Binary Complex BUD32-CGI121 in Complex with Adp, PDB code: 4ww9:

Magnesium binding site 1 out of 1 in the Crystal Structure of Binary Complex BUD32-CGI121 in Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Binary Complex BUD32-CGI121 in Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:56.4 occ:1.00 O3B A:ADP302 2.0 60.4 1.0 C5' A:ADP302 2.2 43.8 1.0 OD1 A:ASP182 2.4 30.0 0.8 O5' A:ADP302 2.9 50.9 1.0 CG A:ASP182 3.0 36.5 1.0 OD2 A:ASP182 3.0 33.1 0.8 CE A:LYS52 3.2 40.7 1.0 C4' A:ADP302 3.2 44.1 1.0 C8 A:ADP302 3.3 35.7 1.0 O4' A:ADP302 3.3 41.7 1.0 PB A:ADP302 3.4 65.1 1.0 O3A A:ADP302 3.4 53.8 1.0 NZ A:LYS52 3.4 37.0 1.0 PA A:ADP302 3.8 58.0 1.0 C3' A:ADP302 3.9 46.8 1.0 CG2 A:VAL30 3.9 34.5 1.0 O2B A:ADP302 4.1 53.9 1.0 N9 A:ADP302 4.1 35.7 1.0 CD A:LYS52 4.2 36.5 1.0 N7 A:ADP302 4.2 33.9 1.0 C1' A:ADP302 4.2 41.4 1.0 CB A:ASP182 4.4 25.8 1.0 O1B A:ADP302 4.6 54.5 1.0 C2' A:ADP302 4.7 45.2 1.0 O1A A:ADP302 4.8 54.1 1.0 O2A A:ADP302 4.8 59.1 1.0 CG A:LYS52 4.9 35.3 1.0 O A:HOH510 4.9 42.2 1.0 O3' A:ADP302 5.0 41.5 1.0 CB A:VAL30 5.0 30.6 1.0

W.Zhang, B.Collinet, M.Graille, M.C.Daugeron, N.Lazar, D.Libri, D.Durand, H.Van Tilbeurgh. Crystal Structures of the GON7/PCC1 and BUD32/CGI121 Complexes Provide A Model For the Complete Yeast Keops Complex. Nucleic Acids Res. 2015.
ISSN: ESSN 1362-4962
PubMed: 25735745
DOI: 10.1093/NAR/GKV155