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Magnesium in PDB 4x2d: Clostridium Difficile Fic PROTEIN_0569 Mutant S31A, E35A in Complex with Atp

Protein crystallography data

The structure of Clostridium Difficile Fic PROTEIN_0569 Mutant S31A, E35A in Complex with Atp, PDB code: 4x2d was solved by R.Jorgensen, E.Dedic, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.85 / 2.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 158.080, 60.100, 124.830, 90.00, 118.60, 90.00
R / Rfree (%) 20.5 / 23.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Clostridium Difficile Fic PROTEIN_0569 Mutant S31A, E35A in Complex with Atp (pdb code 4x2d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Clostridium Difficile Fic PROTEIN_0569 Mutant S31A, E35A in Complex with Atp, PDB code: 4x2d:

Magnesium binding site 1 out of 1 in 4x2d

Go back to Magnesium Binding Sites List in 4x2d
Magnesium binding site 1 out of 1 in the Clostridium Difficile Fic PROTEIN_0569 Mutant S31A, E35A in Complex with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Clostridium Difficile Fic PROTEIN_0569 Mutant S31A, E35A in Complex with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:70.2
occ:1.00
OD1 A:ASP167 2.1 81.7 1.0
OD2 A:ASP167 2.3 92.5 1.0
O1B A:ATP302 2.4 83.5 1.0
O2B A:ATP302 2.5 77.0 1.0
CG A:ASP167 2.5 86.0 1.0
O3G A:ATP302 2.5 68.6 1.0
PB A:ATP302 2.9 77.3 1.0
PG A:ATP302 3.6 68.3 1.0
O3B A:ATP302 3.6 69.8 1.0
CB A:ASP167 4.0 81.8 1.0
NH2 A:ARG171 4.2 64.1 1.0
N A:GLY168 4.3 63.0 1.0
O2G A:ATP302 4.3 71.1 1.0
O3A A:ATP302 4.4 80.4 1.0
CA A:ASP167 4.8 74.4 1.0
O1G A:ATP302 4.8 64.3 1.0
O A:ALA35 4.8 64.5 1.0

Reference:

R.Jorgensen, E.Dedic, H.Alsarraf, D.Welner, H.C.Van Leeuwen, O.Oestergaard. Structure of Clostridium Difficile FIC_0569 S31A, E35A Mutant at 1.8 Angstroms Resolution To Be Published.
Page generated: Mon Dec 14 19:43:13 2020

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