Magnesium in PDB 4x4b: Radiation Damage to the Nucleoprotein Complex C.ESP1396I: Dose (Dwd) 2.1 Mgy

The structure of Radiation Damage to the Nucleoprotein Complex C.ESP1396I: Dose (Dwd) 2.1 Mgy, PDB code: 4x4b was solved by C.S.Bury, J.E.Mcgeehan, E.F.Garman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.03 / 2.80
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	104.310, 104.310, 139.130, 90.00, 90.00, 120.00
R / Rfree (%)	20.5 / 26.2

The binding sites of Magnesium atom in the Radiation Damage to the Nucleoprotein Complex C.ESP1396I: Dose (Dwd) 2.1 Mgy (pdb code 4x4b). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Radiation Damage to the Nucleoprotein Complex C.ESP1396I: Dose (Dwd) 2.1 Mgy, PDB code: 4x4b:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Radiation Damage to the Nucleoprotein Complex C.ESP1396I: Dose (Dwd) 2.1 Mgy


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Radiation Damage to the Nucleoprotein Complex C.ESP1396I: Dose (Dwd) 2.1 Mgy within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg101 b:43.0 occ:1.00 O5' E:DT29 3.1 86.9 1.0 C2' E:DG28 3.4 81.5 1.0 C3' E:DT29 3.5 0.2 1.0 CG D:TYR37 3.6 43.4 0.5 CD1 D:TYR37 3.6 29.1 0.5 OP2 E:DT29 3.6 83.1 1.0 C2' E:DT29 3.8 0.8 1.0 O4' E:DT29 3.9 98.1 1.0 C6 E:DT29 3.9 82.0 1.0 CB D:TYR37 4.0 52.1 1.0 P E:DT29 4.0 77.2 1.0 CD2 D:TYR37 4.0 38.2 0.5 C4' E:DT29 4.0 96.2 1.0 CE1 D:TYR37 4.0 31.6 0.5 C5' E:DT29 4.1 83.9 1.0 C3' E:DG28 4.3 70.4 1.0 N D:ASP34 4.3 86.5 1.0 C1' E:DT29 4.3 0.3 1.0 CE2 D:TYR37 4.4 37.2 0.5 CD2 D:LEU33 4.4 78.5 1.0 CZ D:TYR37 4.4 38.3 0.5 CB D:ASP34 4.5 78.8 1.0 O3' E:DG28 4.6 68.7 1.0 C7 E:DT29 4.6 98.4 1.0 N1 E:DT29 4.6 90.3 1.0 CB D:LEU33 4.6 68.3 1.0 C1' E:DG28 4.6 79.3 1.0 C5 E:DT29 4.7 85.5 1.0 O3' E:DT29 4.7 0.3 1.0 CA D:LEU33 5.0 75.8 1.0

Magnesium binding site 2 out of 2 in the Radiation Damage to the Nucleoprotein Complex C.ESP1396I: Dose (Dwd) 2.1 Mgy


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Radiation Damage to the Nucleoprotein Complex C.ESP1396I: Dose (Dwd) 2.1 Mgy within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg101 b:36.8 occ:1.00 C8 F:DG29 3.0 0.0 1.0 O5' F:DG29 3.3 0.7 1.0 C2' F:DA28 3.4 94.7 1.0 O4' F:DG29 3.5 0.1 1.0 CG A:TYR37 3.7 53.3 0.5 CD1 A:TYR37 3.8 27.2 0.5 N9 F:DG29 3.8 1.0 1.0 C2' F:DG29 3.8 1.0 1.0 C1' F:DG29 3.9 0.5 1.0 C3' F:DG29 3.9 0.6 1.0 OP2 F:DG29 3.9 0.0 1.0 CD2 A:TYR37 4.0 38.4 0.5 N7 F:DG29 4.0 0.2 1.0 CB A:TYR37 4.0 63.7 1.0 C4' F:DG29 4.1 0.2 1.0 P F:DG29 4.2 91.4 1.0 C5' F:DG29 4.2 1.0 1.0 CE1 A:TYR37 4.2 27.0 0.5 C3' F:DA28 4.3 90.8 1.0 CE2 A:TYR37 4.4 31.8 0.5 CB A:ASP34 4.4 93.6 1.0 N A:ASP34 4.4 93.4 1.0 CZ A:TYR37 4.5 34.2 0.5 O3' F:DA28 4.6 96.9 1.0 C1' F:DA28 4.7 90.3 1.0 CD2 A:LEU33 4.9 91.7 1.0

C.Bury, E.F.Garman, H.M.Ginn, R.B.Ravelli, I.Carmichael, G.Kneale, J.E.Mcgeehan. Radiation Damage to Nucleoprotein Complexes in Macromolecular Crystallography. J.Synchrotron Radiat. V. 22 213 2015.
ISSN: ESSN 1600-5775
PubMed: 25723923
DOI: 10.1107/S1600577514026289