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Magnesium in PDB 4xdq: Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile

Protein crystallography data

The structure of Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile, PDB code: 4xdq was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.35
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 74.550, 74.550, 95.530, 90.00, 90.00, 90.00
R / Rfree (%) 12.5 / 14.8

Other elements in 4xdq:

The structure of Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile also contains other interesting chemical elements:

Cadmium (Cd) 1 atom
Chlorine (Cl) 2 atoms
Calcium (Ca) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile (pdb code 4xdq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile, PDB code: 4xdq:

Magnesium binding site 1 out of 1 in 4xdq

Go back to Magnesium Binding Sites List in 4xdq
Magnesium binding site 1 out of 1 in the Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg303

b:19.2
occ:1.00
O A:HOH409 1.9 22.9 1.0
O A:HOH404 1.9 35.1 1.0
O A:HOH732 2.1 50.0 1.0
OD1 A:ASP154 2.1 22.1 1.0
O A:HOH457 2.3 38.0 1.0
CG A:ASP154 3.0 17.6 1.0
OD2 A:ASP154 3.2 17.2 1.0
O A:HOH459 4.0 39.4 1.0
CB A:ASP154 4.4 16.8 1.0
CA A:ASP154 4.8 16.4 1.0
O A:ASP154 4.8 17.7 1.0
C A:ASP154 4.9 15.0 1.0

Reference:

T.E.Edwards, J.Abendroth, Seattle Structural Genomics Center For Infectious Disease. Crystal Structure of A Glycoside Hydrolase Family Protein (RV0315 Ortholog) From Mycobacterium Thermorestibile To Be Published.
Page generated: Mon Dec 14 19:46:14 2020

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