Atomistry » Magnesium » PDB 4x7w-4xgp » 4xgp
Atomistry »
  Magnesium »
    PDB 4x7w-4xgp »
      4xgp »

Magnesium in PDB 4xgp: Crystal Structure of E112A/H234A Mutant of Stationary Phase Survival Protein (Sure) From Salmonella Typhimurium Co-Crystallized and Soaked with Amp.

Enzymatic activity of Crystal Structure of E112A/H234A Mutant of Stationary Phase Survival Protein (Sure) From Salmonella Typhimurium Co-Crystallized and Soaked with Amp.

All present enzymatic activity of Crystal Structure of E112A/H234A Mutant of Stationary Phase Survival Protein (Sure) From Salmonella Typhimurium Co-Crystallized and Soaked with Amp.:
3.1.3.5; 3.1.3.6; 3.6.1.11;

Protein crystallography data

The structure of Crystal Structure of E112A/H234A Mutant of Stationary Phase Survival Protein (Sure) From Salmonella Typhimurium Co-Crystallized and Soaked with Amp., PDB code: 4xgp was solved by Y.K.Mathiharan, M.R.N.Murthy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.87 / 1.90
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 162.520, 96.230, 93.940, 90.00, 98.41, 90.00
R / Rfree (%) 18.9 / 24

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of E112A/H234A Mutant of Stationary Phase Survival Protein (Sure) From Salmonella Typhimurium Co-Crystallized and Soaked with Amp. (pdb code 4xgp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of E112A/H234A Mutant of Stationary Phase Survival Protein (Sure) From Salmonella Typhimurium Co-Crystallized and Soaked with Amp., PDB code: 4xgp:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 4xgp

Go back to Magnesium Binding Sites List in 4xgp
Magnesium binding site 1 out of 4 in the Crystal Structure of E112A/H234A Mutant of Stationary Phase Survival Protein (Sure) From Salmonella Typhimurium Co-Crystallized and Soaked with Amp.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of E112A/H234A Mutant of Stationary Phase Survival Protein (Sure) From Salmonella Typhimurium Co-Crystallized and Soaked with Amp. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:28.8
occ:1.00
 OD1 A:ASP9 2.3 38.2 1.0
O A:HOH651 2.3 31.9 1.0
O2 A:PO4302 2.3 35.9 0.8
OD1 A:ASN92 2.3 26.1 1.0
OG A:SER39 2.5 34.1 1.0
OD1 A:ASP8 2.5 35.8 1.0
O A:HOH656 2.9 51.6 1.0
CG A:ASP9 3.2 39.6 1.0
CG A:ASN92 3.2 34.1 1.0
CB A:SER39 3.3 30.8 1.0
OD2 A:ASP9 3.5 48.2 1.0
ND2 A:ASN92 3.5 29.3 1.0
CG A:ASP8 3.6 34.8 1.0
P A:PO4302 3.7 39.0 0.8
O A:HOH664 3.9 52.0 1.0
OD2 A:ASP8 4.0 40.3 1.0
CA A:SER39 4.0 30.9 0.7
O1 A:PO4302 4.1 25.8 1.0
O A:HOH652 4.3 41.8 1.0
N A:ASP9 4.4 27.4 1.0
C A:ASP8 4.5 23.7 1.0
CB A:ASP9 4.5 32.7 1.0
O A:HOH687 4.5 41.2 1.0
O4 A:PO4302 4.5 37.7 0.8
OG1 A:THR106 4.6 21.8 1.0
N A:SER39 4.6 30.6 0.7
O3 A:PO4302 4.6 40.2 0.8
CA A:ASP9 4.6 30.1 1.0
CB A:ASN92 4.7 26.6 1.0
OD1 A:ASN37 4.7 40.0 1.0
O A:ALA93 4.8 33.5 1.0
O A:ASP8 4.8 27.1 1.0
CB A:ASP8 4.8 34.4 1.0
N A:ALA93 5.0 31.6 1.0
CA A:ASP8 5.0 26.6 1.0

Magnesium binding site 2 out of 4 in 4xgp

Go back to Magnesium Binding Sites List in 4xgp
Magnesium binding site 2 out of 4 in the Crystal Structure of E112A/H234A Mutant of Stationary Phase Survival Protein (Sure) From Salmonella Typhimurium Co-Crystallized and Soaked with Amp.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of E112A/H234A Mutant of Stationary Phase Survival Protein (Sure) From Salmonella Typhimurium Co-Crystallized and Soaked with Amp. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg301

b:32.3
occ:1.00
 OD1 B:ASP8 2.2 31.4 1.0
OD1 B:ASP9 2.4 33.3 1.0
O B:HOH624 2.4 43.3 1.0
OD1 B:ASN92 2.5 31.2 1.0
O B:HOH619 2.6 41.8 1.0
O B:HOH623 2.6 28.6 1.0
CG B:ASP8 3.1 32.2 1.0
O B:HOH622 3.2 29.6 1.0
CG B:ASP9 3.4 36.1 1.0
CB B:ASP8 3.4 29.5 1.0
CG B:ASN92 3.5 34.1 1.0
OD2 B:ASP9 3.6 40.6 1.0
ND2 B:ASN92 3.7 34.2 1.0
O B:HOH672 3.8 22.5 1.0
O B:HOH620 3.9 59.0 1.0
O B:HOH632 4.0 46.7 1.0
O B:HOH618 4.2 49.8 1.0
OD2 B:ASP8 4.2 34.9 1.0
C B:ASP8 4.4 29.1 1.0
N B:ASP9 4.4 28.8 1.0
O B:HOH669 4.5 43.4 1.0
OG1 B:THR106 4.5 24.6 1.0
CA B:ASP8 4.6 30.0 1.0
O B:HOH663 4.7 43.7 1.0
CB B:ASP9 4.7 32.5 1.0
O B:ALA93 4.7 35.5 1.0
O B:ASP8 4.8 28.5 1.0
CB B:ASN92 4.8 32.4 1.0
CA B:ASP9 4.8 33.0 1.0

Magnesium binding site 3 out of 4 in 4xgp

Go back to Magnesium Binding Sites List in 4xgp
Magnesium binding site 3 out of 4 in the Crystal Structure of E112A/H234A Mutant of Stationary Phase Survival Protein (Sure) From Salmonella Typhimurium Co-Crystallized and Soaked with Amp.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of E112A/H234A Mutant of Stationary Phase Survival Protein (Sure) From Salmonella Typhimurium Co-Crystallized and Soaked with Amp. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg301

b:40.8
occ:1.00
 O C:HOH568 2.4 46.5 1.0
OD1 C:ASP9 2.4 32.0 1.0
OD1 C:ASP8 2.5 33.2 1.0
OD1 C:ASN92 2.5 32.3 1.0
O C:HOH567 2.6 38.6 1.0
O C:HOH563 2.8 35.9 1.0
O C:HOH585 3.3 25.8 1.0
O C:HOH562 3.3 28.8 1.0
CG C:ASP9 3.3 34.7 1.0
CG C:ASP8 3.4 31.6 1.0
CG C:ASN92 3.5 30.3 1.0
OD2 C:ASP9 3.5 32.8 1.0
CB C:ASP8 3.6 29.5 1.0
ND2 C:ASN92 3.7 29.1 1.0
O C:HOH574 3.8 33.5 1.0
O C:HOH564 4.1 54.8 1.0
O C:HOH573 4.3 26.9 1.0
O C:HOH570 4.4 39.4 1.0
C C:ASP8 4.5 40.1 1.0
OD2 C:ASP8 4.6 32.9 1.0
OG1 C:THR106 4.6 32.3 1.0
CA C:ASP8 4.7 35.4 1.0
O C:ASP8 4.7 35.1 1.0
CB C:ASP9 4.7 34.7 1.0
N C:ASP9 4.8 34.4 1.0
O C:ALA93 4.8 40.1 1.0
CB C:ASN92 4.9 28.9 1.0
OD1 C:ASN37 4.9 41.6 1.0

Magnesium binding site 4 out of 4 in 4xgp

Go back to Magnesium Binding Sites List in 4xgp
Magnesium binding site 4 out of 4 in the Crystal Structure of E112A/H234A Mutant of Stationary Phase Survival Protein (Sure) From Salmonella Typhimurium Co-Crystallized and Soaked with Amp.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of E112A/H234A Mutant of Stationary Phase Survival Protein (Sure) From Salmonella Typhimurium Co-Crystallized and Soaked with Amp. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg301

b:43.8
occ:1.00
 OD1 D:ASP8 2.2 42.5 1.0
O D:HOH576 2.2 52.4 1.0
OD1 D:ASN92 2.4 43.6 1.0
OD1 D:ASP9 2.5 46.9 1.0
O D:HOH525 2.6 42.9 1.0
O D:HOH527 2.6 48.5 1.0
O D:HOH585 3.0 38.1 1.0
CG D:ASP8 3.2 42.9 1.0
O D:HOH526 3.4 34.4 1.0
CB D:ASP8 3.4 42.7 1.0
CG D:ASP9 3.4 48.6 1.0
CG D:ASN92 3.5 42.7 1.0
OD2 D:ASP9 3.6 48.1 1.0
O D:HOH583 3.7 27.2 1.0
O D:HOH539 3.8 55.0 1.0
ND2 D:ASN92 3.9 38.5 1.0
O D:HOH528 4.3 59.6 1.0
C D:ASP8 4.3 39.6 1.0
OD2 D:ASP8 4.3 42.0 1.0
CA D:ASP8 4.4 39.9 1.0
O D:ASP8 4.5 39.2 1.0
N D:ASP9 4.5 45.1 1.0
O D:HOH540 4.5 53.5 1.0
OG1 D:THR106 4.6 36.0 1.0
O D:HOH581 4.6 53.9 1.0
CB D:ASP9 4.8 46.1 1.0
CB D:ASN92 4.8 43.8 1.0
O D:ALA93 5.0 59.5 1.0

Reference:

Y.K.Mathiharan, H.S.Savithri, M.R.N.Murthy. Insights Into Stabilizing Interactions in the Distorted Domain-Swapped Dimer of Salmonella Typhimurium Survival Protein Acta Crystallogr.,Sect.D V. 71 1812 2015.
ISSN: ESSN 1399-0047
DOI: 10.1107/S1399004715011992
Page generated: Tue Aug 20 15:30:03 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy