Magnesium in PDB 4xk8: Crystal Structure of Plant Photosystem I-Lhci Super-Complex at 2.8 Angstrom Resolution
Enzymatic activity of Crystal Structure of Plant Photosystem I-Lhci Super-Complex at 2.8 Angstrom Resolution
All present enzymatic activity of Crystal Structure of Plant Photosystem I-Lhci Super-Complex at 2.8 Angstrom Resolution:
1.97.1.12;
Protein crystallography data
The structure of Crystal Structure of Plant Photosystem I-Lhci Super-Complex at 2.8 Angstrom Resolution, PDB code: 4xk8
was solved by
M.Suga,
X.Qin,
T.Kuang,
J.R.Shen,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
49.15 /
2.80
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
165.624,
192.220,
175.089,
90.00,
91.41,
90.00
|
R / Rfree (%)
|
21.1 /
24.8
|
Other elements in 4xk8:
The structure of Crystal Structure of Plant Photosystem I-Lhci Super-Complex at 2.8 Angstrom Resolution also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
100;
Page 11, Binding sites: 101 -
110;
Page 12, Binding sites: 111 -
120;
Page 13, Binding sites: 121 -
130;
Page 14, Binding sites: 131 -
140;
Page 15, Binding sites: 141 -
150;
Page 16, Binding sites: 151 -
160;
Page 17, Binding sites: 161 -
170;
Page 18, Binding sites: 171 -
180;
Page 19, Binding sites: 181 -
190;
Page 20, Binding sites: 191 -
200;
Page 21, Binding sites: 201 -
210;
Page 22, Binding sites: 211 -
220;
Page 23, Binding sites: 221 -
230;
Page 24, Binding sites: 231 -
240;
Page 25, Binding sites: 241 -
250;
Page 26, Binding sites: 251 -
260;
Page 27, Binding sites: 261 -
270;
Page 28, Binding sites: 271 -
280;
Page 29, Binding sites: 281 -
290;
Page 30, Binding sites: 291 -
300;
Page 31, Binding sites: 301 -
309;
Binding sites:
The binding sites of Magnesium atom in the Crystal Structure of Plant Photosystem I-Lhci Super-Complex at 2.8 Angstrom Resolution
(pdb code 4xk8). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 309 binding sites of Magnesium where determined in the
Crystal Structure of Plant Photosystem I-Lhci Super-Complex at 2.8 Angstrom Resolution, PDB code: 4xk8:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 309 in 4xk8
Go back to
Magnesium Binding Sites List in 4xk8
Magnesium binding site 1 out
of 309 in the Crystal Structure of Plant Photosystem I-Lhci Super-Complex at 2.8 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of Plant Photosystem I-Lhci Super-Complex at 2.8 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg801
b:40.6
occ:1.00
|
MG
|
A:CLA801
|
0.0
|
40.6
|
1.0
|
ND
|
A:CLA801
|
2.0
|
44.2
|
1.0
|
NB
|
A:CLA801
|
2.0
|
50.0
|
1.0
|
NC
|
A:CLA801
|
2.1
|
48.8
|
1.0
|
NA
|
A:CLA801
|
2.1
|
44.9
|
1.0
|
NE2
|
A:HIS683
|
2.4
|
44.1
|
1.0
|
C4D
|
A:CLA801
|
3.0
|
40.5
|
1.0
|
C1C
|
A:CLA801
|
3.0
|
48.9
|
1.0
|
C4A
|
A:CLA801
|
3.0
|
43.8
|
1.0
|
C4B
|
A:CLA801
|
3.0
|
49.4
|
1.0
|
C1B
|
A:CLA801
|
3.0
|
46.8
|
1.0
|
C1A
|
A:CLA801
|
3.1
|
42.4
|
1.0
|
C4C
|
A:CLA801
|
3.1
|
47.2
|
1.0
|
C1D
|
A:CLA801
|
3.3
|
45.6
|
1.0
|
CE1
|
A:HIS683
|
3.4
|
44.4
|
1.0
|
CD2
|
A:HIS683
|
3.4
|
46.7
|
1.0
|
CHB
|
A:CLA801
|
3.4
|
42.7
|
1.0
|
CHC
|
A:CLA801
|
3.4
|
49.0
|
1.0
|
CHA
|
A:CLA801
|
3.5
|
40.5
|
1.0
|
CHD
|
A:CLA801
|
3.7
|
44.0
|
1.0
|
CAB
|
B:CLA802
|
3.8
|
50.0
|
1.0
|
C3B
|
B:CLA802
|
4.0
|
50.2
|
1.0
|
C3D
|
A:CLA801
|
4.3
|
40.6
|
1.0
|
C3B
|
A:CLA801
|
4.4
|
49.0
|
1.0
|
C4B
|
B:CLA802
|
4.4
|
49.9
|
1.0
|
C2B
|
A:CLA801
|
4.4
|
45.9
|
1.0
|
C2C
|
A:CLA801
|
4.4
|
48.2
|
1.0
|
C3A
|
A:CLA801
|
4.4
|
43.2
|
1.0
|
C2A
|
A:CLA801
|
4.4
|
41.1
|
1.0
|
C3C
|
A:CLA801
|
4.4
|
48.9
|
1.0
|
CHC
|
B:CLA802
|
4.5
|
46.4
|
1.0
|
C2D
|
A:CLA801
|
4.5
|
41.8
|
1.0
|
ND1
|
A:HIS683
|
4.5
|
45.7
|
1.0
|
CG
|
A:HIS683
|
4.5
|
47.8
|
1.0
|
C2B
|
B:CLA802
|
4.8
|
51.8
|
1.0
|
CBB
|
B:CLA802
|
4.8
|
50.4
|
1.0
|
CMA
|
A:CLA801
|
4.9
|
43.3
|
1.0
|
CBD
|
A:CLA801
|
4.9
|
41.9
|
1.0
|
|
Magnesium binding site 2 out
of 309 in 4xk8
Go back to
Magnesium Binding Sites List in 4xk8
Magnesium binding site 2 out
of 309 in the Crystal Structure of Plant Photosystem I-Lhci Super-Complex at 2.8 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of Plant Photosystem I-Lhci Super-Complex at 2.8 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg802
b:48.2
occ:1.00
|
MG
|
A:CLA802
|
0.0
|
48.2
|
1.0
|
ND
|
A:CLA802
|
2.0
|
42.3
|
1.0
|
NB
|
A:CLA802
|
2.0
|
42.2
|
1.0
|
NC
|
A:CLA802
|
2.1
|
41.9
|
1.0
|
NA
|
A:CLA802
|
2.1
|
42.3
|
1.0
|
C4D
|
A:CLA802
|
3.0
|
42.5
|
1.0
|
C1C
|
A:CLA802
|
3.0
|
41.8
|
1.0
|
C4B
|
A:CLA802
|
3.0
|
44.8
|
1.0
|
C4A
|
A:CLA802
|
3.0
|
42.3
|
1.0
|
C1B
|
A:CLA802
|
3.0
|
43.8
|
1.0
|
C1A
|
A:CLA802
|
3.1
|
43.8
|
1.0
|
C4C
|
A:CLA802
|
3.1
|
42.0
|
1.0
|
NE1
|
B:TRP582
|
3.2
|
42.2
|
1.0
|
SD
|
A:MET691
|
3.3
|
42.7
|
1.0
|
C1D
|
A:CLA802
|
3.3
|
42.3
|
1.0
|
CHC
|
A:CLA802
|
3.4
|
42.2
|
1.0
|
CHB
|
A:CLA802
|
3.4
|
42.2
|
1.0
|
CHA
|
A:CLA802
|
3.4
|
42.6
|
1.0
|
CHD
|
A:CLA802
|
3.7
|
45.0
|
1.0
|
CG
|
A:MET691
|
3.9
|
43.1
|
1.0
|
CE2
|
B:TRP582
|
4.0
|
44.9
|
1.0
|
CZ2
|
B:TRP582
|
4.1
|
43.6
|
1.0
|
CD1
|
B:TRP582
|
4.2
|
43.7
|
1.0
|
C3D
|
A:CLA802
|
4.3
|
43.8
|
1.0
|
CB
|
A:MET691
|
4.3
|
41.9
|
1.0
|
C3B
|
A:CLA802
|
4.3
|
44.3
|
1.0
|
C2C
|
A:CLA802
|
4.3
|
41.6
|
1.0
|
C2B
|
A:CLA802
|
4.4
|
41.9
|
1.0
|
C3A
|
A:CLA802
|
4.4
|
47.0
|
1.0
|
C2A
|
A:CLA802
|
4.4
|
43.9
|
1.0
|
C3C
|
A:CLA802
|
4.4
|
41.8
|
1.0
|
CE
|
A:MET691
|
4.5
|
74.5
|
1.0
|
C2D
|
A:CLA802
|
4.5
|
42.5
|
1.0
|
CMC
|
A:CLA854
|
4.7
|
41.7
|
1.0
|
CBD
|
A:CLA802
|
4.9
|
45.3
|
1.0
|
|
Magnesium binding site 3 out
of 309 in 4xk8
Go back to
Magnesium Binding Sites List in 4xk8
Magnesium binding site 3 out
of 309 in the Crystal Structure of Plant Photosystem I-Lhci Super-Complex at 2.8 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of Plant Photosystem I-Lhci Super-Complex at 2.8 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg803
b:59.8
occ:1.00
|
MG
|
A:CLA803
|
0.0
|
59.8
|
1.0
|
ND
|
A:CLA803
|
2.0
|
42.9
|
1.0
|
NB
|
A:CLA803
|
2.0
|
50.4
|
1.0
|
NC
|
A:CLA803
|
2.1
|
40.9
|
1.0
|
NA
|
A:CLA803
|
2.1
|
46.3
|
1.0
|
O
|
A:HOH925
|
2.1
|
50.7
|
1.0
|
C4D
|
A:CLA803
|
3.0
|
42.4
|
1.0
|
C1C
|
A:CLA803
|
3.0
|
41.5
|
1.0
|
C4B
|
A:CLA803
|
3.0
|
48.5
|
1.0
|
C1B
|
A:CLA803
|
3.0
|
48.9
|
1.0
|
C4A
|
A:CLA803
|
3.0
|
45.7
|
1.0
|
C1A
|
A:CLA803
|
3.1
|
43.8
|
1.0
|
C4C
|
A:CLA803
|
3.1
|
41.4
|
1.0
|
CBB
|
B:CLA803
|
3.2
|
40.6
|
1.0
|
C1D
|
A:CLA803
|
3.3
|
43.8
|
1.0
|
CHB
|
A:CLA803
|
3.4
|
47.0
|
1.0
|
CHC
|
A:CLA803
|
3.4
|
43.4
|
1.0
|
CHA
|
A:CLA803
|
3.4
|
44.0
|
1.0
|
CHD
|
A:CLA803
|
3.7
|
41.9
|
1.0
|
C3D
|
A:CLA803
|
4.3
|
44.7
|
1.0
|
C2C
|
A:CLA803
|
4.3
|
42.6
|
1.0
|
C3B
|
A:CLA803
|
4.3
|
50.9
|
1.0
|
C2B
|
A:CLA803
|
4.4
|
50.5
|
1.0
|
C3C
|
A:CLA803
|
4.4
|
40.5
|
1.0
|
C3A
|
A:CLA803
|
4.4
|
41.6
|
1.0
|
C2A
|
A:CLA803
|
4.4
|
42.2
|
1.0
|
CAB
|
B:CLA803
|
4.5
|
41.6
|
1.0
|
CB
|
B:ALA658
|
4.5
|
50.5
|
1.0
|
C2D
|
A:CLA803
|
4.5
|
40.0
|
1.0
|
OD1
|
A:ASN607
|
4.5
|
54.6
|
1.0
|
C2
|
A:CLA801
|
4.6
|
46.6
|
1.0
|
CBD
|
A:CLA803
|
4.9
|
44.3
|
1.0
|
C3
|
A:CLA801
|
4.9
|
45.0
|
1.0
|
C1
|
A:CLA801
|
5.0
|
45.5
|
1.0
|
|
Magnesium binding site 4 out
of 309 in 4xk8
Go back to
Magnesium Binding Sites List in 4xk8
Magnesium binding site 4 out
of 309 in the Crystal Structure of Plant Photosystem I-Lhci Super-Complex at 2.8 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of Plant Photosystem I-Lhci Super-Complex at 2.8 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg804
b:46.6
occ:1.00
|
MG
|
A:CLA804
|
0.0
|
46.6
|
1.0
|
ND
|
A:CLA804
|
2.0
|
56.2
|
1.0
|
NB
|
A:CLA804
|
2.0
|
56.2
|
1.0
|
NC
|
A:CLA804
|
2.1
|
56.0
|
1.0
|
NA
|
A:CLA804
|
2.1
|
59.0
|
1.0
|
NE2
|
A:HIS58
|
2.4
|
45.9
|
1.0
|
C4D
|
A:CLA804
|
3.0
|
57.8
|
1.0
|
C1C
|
A:CLA804
|
3.0
|
56.0
|
1.0
|
C4B
|
A:CLA804
|
3.0
|
56.7
|
1.0
|
C4A
|
A:CLA804
|
3.0
|
57.5
|
1.0
|
C1B
|
A:CLA804
|
3.0
|
56.9
|
1.0
|
C1A
|
A:CLA804
|
3.1
|
58.5
|
1.0
|
C4C
|
A:CLA804
|
3.1
|
56.6
|
1.0
|
CD2
|
A:HIS58
|
3.3
|
45.7
|
1.0
|
C1D
|
A:CLA804
|
3.3
|
56.5
|
1.0
|
CHC
|
A:CLA804
|
3.4
|
56.0
|
1.0
|
CHB
|
A:CLA804
|
3.4
|
56.8
|
1.0
|
CE1
|
A:HIS58
|
3.4
|
46.4
|
1.0
|
CHA
|
A:CLA804
|
3.5
|
59.1
|
1.0
|
CHD
|
A:CLA804
|
3.7
|
56.5
|
1.0
|
CG
|
J:PRO12
|
3.9
|
60.7
|
1.0
|
CB
|
J:PRO12
|
4.1
|
59.4
|
1.0
|
C3D
|
A:CLA804
|
4.3
|
58.4
|
1.0
|
C3B
|
A:CLA804
|
4.4
|
58.3
|
1.0
|
C2C
|
A:CLA804
|
4.4
|
57.0
|
1.0
|
C2B
|
A:CLA804
|
4.4
|
56.2
|
1.0
|
C3A
|
A:CLA804
|
4.4
|
56.4
|
1.0
|
C2A
|
A:CLA804
|
4.4
|
57.0
|
1.0
|
C3C
|
A:CLA804
|
4.4
|
57.7
|
1.0
|
CG
|
A:HIS58
|
4.5
|
48.3
|
1.0
|
C2D
|
A:CLA804
|
4.5
|
57.3
|
1.0
|
ND1
|
A:HIS58
|
4.5
|
45.7
|
1.0
|
CD
|
J:PRO12
|
4.7
|
60.8
|
1.0
|
C29
|
A:BCR856
|
4.8
|
70.0
|
1.0
|
CBD
|
A:CLA804
|
4.9
|
59.4
|
1.0
|
|
Magnesium binding site 5 out
of 309 in 4xk8
Go back to
Magnesium Binding Sites List in 4xk8
Magnesium binding site 5 out
of 309 in the Crystal Structure of Plant Photosystem I-Lhci Super-Complex at 2.8 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Crystal Structure of Plant Photosystem I-Lhci Super-Complex at 2.8 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg805
b:48.6
occ:1.00
|
MG
|
A:CLA805
|
0.0
|
48.6
|
1.0
|
ND
|
A:CLA805
|
2.0
|
52.6
|
1.0
|
NB
|
A:CLA805
|
2.0
|
50.9
|
1.0
|
NC
|
A:CLA805
|
2.1
|
51.0
|
1.0
|
NA
|
A:CLA805
|
2.1
|
58.9
|
1.0
|
NE2
|
A:HIS62
|
2.4
|
54.7
|
1.0
|
C4D
|
A:CLA805
|
3.0
|
55.4
|
1.0
|
C1C
|
A:CLA805
|
3.0
|
48.4
|
1.0
|
C4B
|
A:CLA805
|
3.0
|
48.8
|
1.0
|
C4A
|
A:CLA805
|
3.0
|
56.5
|
1.0
|
C1B
|
A:CLA805
|
3.0
|
51.3
|
1.0
|
C1A
|
A:CLA805
|
3.1
|
59.2
|
1.0
|
C4C
|
A:CLA805
|
3.1
|
48.4
|
1.0
|
C1D
|
A:CLA805
|
3.3
|
52.9
|
1.0
|
CE1
|
A:HIS62
|
3.3
|
54.4
|
1.0
|
CHB
|
A:CLA805
|
3.4
|
52.8
|
1.0
|
CHC
|
A:CLA805
|
3.4
|
47.0
|
1.0
|
CD2
|
A:HIS62
|
3.4
|
54.6
|
1.0
|
CHA
|
A:CLA805
|
3.5
|
58.7
|
1.0
|
CHD
|
A:CLA805
|
3.7
|
50.8
|
1.0
|
C7
|
A:CLA812
|
4.2
|
65.0
|
1.0
|
C3D
|
A:CLA805
|
4.3
|
55.6
|
1.0
|
C2C
|
A:CLA805
|
4.3
|
49.0
|
1.0
|
C3B
|
A:CLA805
|
4.3
|
48.8
|
1.0
|
C2B
|
A:CLA805
|
4.4
|
49.3
|
1.0
|
C3A
|
A:CLA805
|
4.4
|
57.6
|
1.0
|
C2A
|
A:CLA805
|
4.4
|
60.3
|
1.0
|
C3C
|
A:CLA805
|
4.4
|
48.5
|
1.0
|
ND1
|
A:HIS62
|
4.4
|
54.2
|
1.0
|
C2D
|
A:CLA805
|
4.5
|
54.1
|
1.0
|
CG
|
A:HIS62
|
4.5
|
53.4
|
1.0
|
C10
|
A:CLA812
|
4.6
|
65.9
|
1.0
|
CBB
|
A:CLA804
|
4.8
|
63.1
|
1.0
|
CBD
|
A:CLA805
|
4.9
|
59.1
|
1.0
|
CBB
|
A:CLA806
|
5.0
|
46.9
|
1.0
|
|
Magnesium binding site 6 out
of 309 in 4xk8
Go back to
Magnesium Binding Sites List in 4xk8
Magnesium binding site 6 out
of 309 in the Crystal Structure of Plant Photosystem I-Lhci Super-Complex at 2.8 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Crystal Structure of Plant Photosystem I-Lhci Super-Complex at 2.8 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg806
b:46.4
occ:1.00
|
MG
|
A:CLA806
|
0.0
|
46.4
|
1.0
|
ND
|
A:CLA806
|
2.0
|
46.5
|
1.0
|
NB
|
A:CLA806
|
2.0
|
46.4
|
1.0
|
NC
|
A:CLA806
|
2.1
|
46.5
|
1.0
|
NA
|
A:CLA806
|
2.1
|
50.9
|
1.0
|
NE2
|
A:HIS82
|
2.4
|
52.6
|
1.0
|
C4D
|
A:CLA806
|
3.0
|
47.9
|
1.0
|
C1C
|
A:CLA806
|
3.0
|
48.0
|
1.0
|
C4B
|
A:CLA806
|
3.0
|
46.5
|
1.0
|
CD2
|
A:HIS82
|
3.0
|
52.2
|
1.0
|
C4A
|
A:CLA806
|
3.0
|
50.2
|
1.0
|
C1B
|
A:CLA806
|
3.0
|
47.8
|
1.0
|
C1A
|
A:CLA806
|
3.1
|
51.7
|
1.0
|
C4C
|
A:CLA806
|
3.1
|
46.5
|
1.0
|
CMB
|
A:CLA831
|
3.2
|
55.4
|
1.0
|
C1D
|
A:CLA806
|
3.3
|
46.9
|
1.0
|
CHC
|
A:CLA806
|
3.4
|
49.2
|
1.0
|
CHB
|
A:CLA806
|
3.4
|
50.4
|
1.0
|
CHA
|
A:CLA806
|
3.5
|
50.9
|
1.0
|
CE1
|
A:HIS82
|
3.5
|
53.8
|
1.0
|
CHD
|
A:CLA806
|
3.7
|
47.2
|
1.0
|
C3D
|
A:CLA806
|
4.3
|
48.1
|
1.0
|
CG
|
A:HIS82
|
4.3
|
52.6
|
1.0
|
C3B
|
A:CLA806
|
4.3
|
47.2
|
1.0
|
C2C
|
A:CLA806
|
4.4
|
47.6
|
1.0
|
C2B
|
A:CLA806
|
4.4
|
50.9
|
1.0
|
C3A
|
A:CLA806
|
4.4
|
52.1
|
1.0
|
C2A
|
A:CLA806
|
4.4
|
52.1
|
1.0
|
C3C
|
A:CLA806
|
4.4
|
49.8
|
1.0
|
ND1
|
A:HIS82
|
4.5
|
54.3
|
1.0
|
C2D
|
A:CLA806
|
4.5
|
47.8
|
1.0
|
C2B
|
A:CLA831
|
4.6
|
54.7
|
1.0
|
CBD
|
A:CLA806
|
4.9
|
51.8
|
1.0
|
|
Magnesium binding site 7 out
of 309 in 4xk8
Go back to
Magnesium Binding Sites List in 4xk8
Magnesium binding site 7 out
of 309 in the Crystal Structure of Plant Photosystem I-Lhci Super-Complex at 2.8 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Crystal Structure of Plant Photosystem I-Lhci Super-Complex at 2.8 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg807
b:69.1
occ:1.00
|
MG
|
A:CLA807
|
0.0
|
69.1
|
1.0
|
ND
|
A:CLA807
|
2.0
|
45.0
|
1.0
|
NB
|
A:CLA807
|
2.0
|
44.8
|
1.0
|
NC
|
A:CLA807
|
2.1
|
47.0
|
1.0
|
NA
|
A:CLA807
|
2.1
|
49.7
|
1.0
|
OE1
|
A:GLN85
|
2.3
|
50.0
|
1.0
|
C4D
|
A:CLA807
|
3.0
|
45.2
|
1.0
|
C1C
|
A:CLA807
|
3.0
|
45.0
|
1.0
|
C4B
|
A:CLA807
|
3.0
|
45.8
|
1.0
|
C4A
|
A:CLA807
|
3.0
|
47.1
|
1.0
|
C1B
|
A:CLA807
|
3.0
|
44.6
|
1.0
|
C1A
|
A:CLA807
|
3.1
|
49.3
|
1.0
|
C4C
|
A:CLA807
|
3.2
|
45.1
|
1.0
|
CD
|
A:GLN85
|
3.3
|
51.9
|
1.0
|
C1D
|
A:CLA807
|
3.3
|
45.2
|
1.0
|
CHB
|
A:CLA807
|
3.4
|
47.3
|
1.0
|
CHC
|
A:CLA807
|
3.4
|
44.9
|
1.0
|
C16
|
A:CLA807
|
3.5
|
48.3
|
1.0
|
CHA
|
A:CLA807
|
3.5
|
46.6
|
1.0
|
NE2
|
A:GLN85
|
3.6
|
54.5
|
1.0
|
CHD
|
A:CLA807
|
3.7
|
45.2
|
1.0
|
C17
|
A:CLA807
|
3.9
|
49.4
|
1.0
|
C3D
|
A:CLA807
|
4.3
|
45.2
|
1.0
|
C3B
|
A:CLA807
|
4.4
|
44.6
|
1.0
|
C2C
|
A:CLA807
|
4.4
|
45.1
|
1.0
|
C2B
|
A:CLA807
|
4.4
|
44.5
|
1.0
|
C3A
|
A:CLA807
|
4.4
|
47.7
|
1.0
|
C2A
|
A:CLA807
|
4.4
|
50.0
|
1.0
|
C3C
|
A:CLA807
|
4.4
|
45.2
|
1.0
|
C2D
|
A:CLA807
|
4.5
|
45.2
|
1.0
|
CG
|
A:GLN85
|
4.6
|
46.3
|
1.0
|
CMA
|
A:CLA806
|
4.7
|
52.4
|
1.0
|
C15
|
A:CLA807
|
4.8
|
48.2
|
1.0
|
CBD
|
A:CLA807
|
4.9
|
47.1
|
1.0
|
|
Magnesium binding site 8 out
of 309 in 4xk8
Go back to
Magnesium Binding Sites List in 4xk8
Magnesium binding site 8 out
of 309 in the Crystal Structure of Plant Photosystem I-Lhci Super-Complex at 2.8 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Crystal Structure of Plant Photosystem I-Lhci Super-Complex at 2.8 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg808
b:66.2
occ:1.00
|
MG
|
A:CLA808
|
0.0
|
66.2
|
1.0
|
ND
|
A:CLA808
|
2.0
|
60.3
|
1.0
|
NB
|
A:CLA808
|
2.0
|
61.4
|
1.0
|
NC
|
A:CLA808
|
2.1
|
60.4
|
1.0
|
NA
|
A:CLA808
|
2.1
|
61.6
|
1.0
|
NE2
|
A:HIS99
|
2.4
|
50.8
|
1.0
|
C4D
|
A:CLA808
|
3.0
|
60.4
|
1.0
|
C1C
|
A:CLA808
|
3.0
|
60.9
|
1.0
|
C4B
|
A:CLA808
|
3.0
|
60.8
|
1.0
|
C4A
|
A:CLA808
|
3.0
|
60.6
|
1.0
|
C1B
|
A:CLA808
|
3.0
|
61.2
|
1.0
|
C1A
|
A:CLA808
|
3.1
|
61.5
|
1.0
|
C4C
|
A:CLA808
|
3.1
|
61.1
|
1.0
|
C1D
|
A:CLA808
|
3.3
|
61.2
|
1.0
|
CE1
|
A:HIS99
|
3.3
|
49.6
|
1.0
|
CHC
|
A:CLA808
|
3.4
|
61.5
|
1.0
|
CHB
|
A:CLA808
|
3.4
|
61.1
|
1.0
|
CD2
|
A:HIS99
|
3.4
|
52.7
|
1.0
|
CHA
|
A:CLA808
|
3.5
|
60.7
|
1.0
|
CHD
|
A:CLA808
|
3.7
|
62.3
|
1.0
|
C3D
|
A:CLA808
|
4.3
|
59.9
|
1.0
|
C3B
|
A:CLA808
|
4.3
|
60.3
|
1.0
|
C2C
|
A:CLA808
|
4.4
|
59.4
|
1.0
|
C2B
|
A:CLA808
|
4.4
|
60.4
|
1.0
|
C3A
|
A:CLA808
|
4.4
|
58.4
|
1.0
|
C2A
|
A:CLA808
|
4.4
|
61.2
|
1.0
|
C3C
|
A:CLA808
|
4.4
|
59.1
|
1.0
|
ND1
|
A:HIS99
|
4.5
|
49.0
|
1.0
|
C2D
|
A:CLA808
|
4.5
|
60.2
|
1.0
|
CG
|
A:HIS99
|
4.5
|
52.0
|
1.0
|
CBD
|
A:CLA808
|
4.9
|
60.2
|
1.0
|
|
Magnesium binding site 9 out
of 309 in 4xk8
Go back to
Magnesium Binding Sites List in 4xk8
Magnesium binding site 9 out
of 309 in the Crystal Structure of Plant Photosystem I-Lhci Super-Complex at 2.8 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Crystal Structure of Plant Photosystem I-Lhci Super-Complex at 2.8 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg809
b:50.3
occ:1.00
|
MG
|
A:CLA809
|
0.0
|
50.3
|
1.0
|
ND
|
A:CLA809
|
2.0
|
47.0
|
1.0
|
NB
|
A:CLA809
|
2.0
|
50.5
|
1.0
|
NC
|
A:CLA809
|
2.1
|
51.0
|
1.0
|
NA
|
A:CLA809
|
2.1
|
51.4
|
1.0
|
OE1
|
A:GLN121
|
2.3
|
44.8
|
1.0
|
C4D
|
A:CLA809
|
3.0
|
48.7
|
1.0
|
C1C
|
A:CLA809
|
3.0
|
50.2
|
1.0
|
C4B
|
A:CLA809
|
3.0
|
49.9
|
1.0
|
C4A
|
A:CLA809
|
3.0
|
52.0
|
1.0
|
C1B
|
A:CLA809
|
3.0
|
51.2
|
1.0
|
C1A
|
A:CLA809
|
3.1
|
52.9
|
1.0
|
C4C
|
A:CLA809
|
3.1
|
49.5
|
1.0
|
CD
|
A:GLN121
|
3.2
|
45.1
|
1.0
|
C1D
|
A:CLA809
|
3.3
|
46.1
|
1.0
|
CHC
|
A:CLA809
|
3.4
|
49.9
|
1.0
|
NE2
|
A:GLN121
|
3.4
|
45.0
|
1.0
|
CHB
|
A:CLA809
|
3.4
|
51.2
|
1.0
|
CHA
|
A:CLA809
|
3.5
|
48.8
|
1.0
|
CHD
|
A:CLA809
|
3.7
|
47.7
|
1.0
|
C4
|
A:CLA829
|
3.9
|
58.2
|
1.0
|
C3
|
A:CLA829
|
4.2
|
56.4
|
1.0
|
C1
|
A:CLA829
|
4.2
|
53.6
|
1.0
|
C3D
|
A:CLA809
|
4.3
|
46.8
|
1.0
|
C3B
|
A:CLA809
|
4.4
|
50.3
|
1.0
|
C2
|
A:CLA829
|
4.4
|
55.7
|
1.0
|
C2C
|
A:CLA809
|
4.4
|
48.3
|
1.0
|
C2B
|
A:CLA809
|
4.4
|
51.8
|
1.0
|
C3A
|
A:CLA809
|
4.4
|
54.1
|
1.0
|
C2A
|
A:CLA809
|
4.4
|
55.4
|
1.0
|
C3C
|
A:CLA809
|
4.4
|
49.5
|
1.0
|
C2D
|
A:CLA809
|
4.5
|
46.6
|
1.0
|
CG
|
A:GLN121
|
4.6
|
51.4
|
1.0
|
CBD
|
A:CLA809
|
4.9
|
48.5
|
1.0
|
O1A
|
A:CLA809
|
5.0
|
65.3
|
1.0
|
|
Magnesium binding site 10 out
of 309 in 4xk8
Go back to
Magnesium Binding Sites List in 4xk8
Magnesium binding site 10 out
of 309 in the Crystal Structure of Plant Photosystem I-Lhci Super-Complex at 2.8 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Crystal Structure of Plant Photosystem I-Lhci Super-Complex at 2.8 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg810
b:55.6
occ:1.00
|
MG
|
A:CLA810
|
0.0
|
55.6
|
1.0
|
ND
|
A:CLA810
|
2.0
|
44.7
|
1.0
|
NB
|
A:CLA810
|
2.0
|
47.7
|
1.0
|
NC
|
A:CLA810
|
2.1
|
44.4
|
1.0
|
NA
|
A:CLA810
|
2.1
|
48.6
|
1.0
|
OE1
|
A:GLN129
|
2.3
|
55.5
|
1.0
|
C4D
|
A:CLA810
|
3.0
|
47.8
|
1.0
|
C1C
|
A:CLA810
|
3.0
|
46.1
|
1.0
|
C4B
|
A:CLA810
|
3.0
|
47.9
|
1.0
|
C1B
|
A:CLA810
|
3.0
|
48.3
|
1.0
|
C4A
|
A:CLA810
|
3.0
|
50.1
|
1.0
|
C1A
|
A:CLA810
|
3.1
|
48.7
|
1.0
|
C4C
|
A:CLA810
|
3.1
|
44.2
|
1.0
|
CD
|
A:GLN129
|
3.2
|
54.7
|
1.0
|
C1D
|
A:CLA810
|
3.3
|
49.1
|
1.0
|
CHB
|
A:CLA810
|
3.4
|
49.2
|
1.0
|
CHC
|
A:CLA810
|
3.4
|
46.8
|
1.0
|
CHA
|
A:CLA810
|
3.5
|
49.5
|
1.0
|
NE2
|
A:GLN129
|
3.6
|
52.8
|
1.0
|
CHD
|
A:CLA810
|
3.7
|
48.2
|
1.0
|
C3D
|
A:CLA810
|
4.3
|
49.5
|
1.0
|
C17
|
A:CLA829
|
4.3
|
49.7
|
1.0
|
C3B
|
A:CLA810
|
4.3
|
48.8
|
1.0
|
C2B
|
A:CLA810
|
4.3
|
48.5
|
1.0
|
C2C
|
A:CLA810
|
4.4
|
44.6
|
1.0
|
C3A
|
A:CLA810
|
4.4
|
52.9
|
1.0
|
C2A
|
A:CLA810
|
4.4
|
53.9
|
1.0
|
C3C
|
A:CLA810
|
4.4
|
43.9
|
1.0
|
C2D
|
A:CLA810
|
4.5
|
44.6
|
1.0
|
C15
|
A:CLA829
|
4.5
|
52.8
|
1.0
|
CG
|
A:GLN129
|
4.6
|
56.4
|
1.0
|
CB
|
A:GLN129
|
4.7
|
57.1
|
1.0
|
CBD
|
A:CLA810
|
4.9
|
49.1
|
1.0
|
|
Reference:
X.Qin,
M.Suga,
T.Kuang,
J.R.Shen.
Structural Basis For Energy Transfer Pathways in the Plant Psi-Lhci Supercomplex Science V. 348 989 2015.
ISSN: ESSN 1095-9203
PubMed: 26023133
DOI: 10.1126/SCIENCE.AAB0214
Page generated: Tue Aug 20 15:32:57 2024
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