Magnesium in PDB 4xwo: Structure of GET3 Bound to the Transmembrane Domain of SEC22
Protein crystallography data
The structure of Structure of GET3 Bound to the Transmembrane Domain of SEC22, PDB code: 4xwo
was solved by
A.Mateja,
M.Paduch,
H.-Y.Chang,
A.Szydlowska,
A.A.Kossiakoff,
R.S.Hegde,
R.J.Keenan,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
39.72 /
2.75
|
|
Space group
|
P 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
112.580,
119.450,
147.570,
71.89,
89.86,
66.61
|
|
R / Rfree (%)
|
19.6 /
24.7
|
Other elements in 4xwo:
The structure of Structure of GET3 Bound to the Transmembrane Domain of SEC22 also contains other interesting chemical elements:
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Structure of GET3 Bound to the Transmembrane Domain of SEC22
(pdb code 4xwo). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the
Structure of GET3 Bound to the Transmembrane Domain of SEC22, PDB code: 4xwo:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Magnesium binding site 1 out
of 8 in 4xwo
Go back to
Magnesium Binding Sites List in 4xwo
Magnesium binding site 1 out
of 8 in the Structure of GET3 Bound to the Transmembrane Domain of SEC22
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of GET3 Bound to the Transmembrane Domain of SEC22 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg401
b:57.4
occ:1.00
|
O3G
|
A:ATP404
|
1.9
|
50.7
|
0.5
|
|
O1B
|
A:ADP403
|
2.0
|
51.9
|
0.5
|
|
O2B
|
A:ATP404
|
2.1
|
52.6
|
0.5
|
|
O
|
A:HOH517
|
2.1
|
33.6
|
1.0
|
|
OG1
|
A:THR32
|
2.2
|
31.0
|
1.0
|
|
O
|
A:HOH519
|
2.5
|
77.9
|
1.0
|
|
O
|
A:HOH518
|
2.5
|
51.5
|
1.0
|
|
PG
|
A:ATP404
|
3.0
|
49.7
|
0.5
|
|
O3B
|
A:ADP403
|
3.0
|
48.5
|
0.5
|
|
PB
|
A:ADP403
|
3.0
|
51.4
|
0.5
|
|
PB
|
A:ATP404
|
3.1
|
51.5
|
0.5
|
|
O3B
|
A:ATP404
|
3.2
|
48.6
|
0.5
|
|
CB
|
A:THR32
|
3.3
|
35.4
|
1.0
|
|
N
|
A:THR32
|
3.7
|
49.8
|
1.0
|
|
O2G
|
A:ATP404
|
3.8
|
54.3
|
0.5
|
|
O1B
|
A:ATP404
|
3.8
|
53.0
|
0.5
|
|
O2B
|
A:ADP403
|
4.0
|
53.2
|
0.5
|
|
CA
|
A:THR32
|
4.0
|
48.3
|
1.0
|
|
O2A
|
A:ADP403
|
4.1
|
50.6
|
0.5
|
|
O1G
|
A:ATP404
|
4.1
|
45.2
|
0.5
|
|
ND2
|
A:ASN61
|
4.1
|
76.3
|
1.0
|
|
O3A
|
A:ADP403
|
4.2
|
52.8
|
0.5
|
|
OD2
|
A:ASP166
|
4.2
|
69.7
|
1.0
|
|
OD1
|
A:ASP166
|
4.3
|
67.7
|
1.0
|
|
ND2
|
A:ASN57
|
4.3
|
55.5
|
1.0
|
|
O
|
A:HOH520
|
4.3
|
51.5
|
1.0
|
|
O1A
|
A:ATP404
|
4.4
|
50.9
|
0.5
|
|
O3A
|
A:ATP404
|
4.4
|
53.0
|
0.5
|
|
CB
|
A:LYS31
|
4.5
|
34.8
|
1.0
|
|
CG2
|
A:THR32
|
4.5
|
32.9
|
1.0
|
|
PA
|
A:ADP403
|
4.6
|
51.6
|
0.5
|
|
O1A
|
A:ADP403
|
4.6
|
50.9
|
0.5
|
|
CE
|
A:LYS31
|
4.7
|
34.8
|
1.0
|
|
NZ
|
A:LYS31
|
4.7
|
35.6
|
1.0
|
|
CG
|
A:ASP166
|
4.7
|
64.3
|
1.0
|
|
C
|
A:LYS31
|
4.7
|
48.0
|
1.0
|
|
CB
|
A:ASN61
|
4.7
|
62.4
|
1.0
|
|
CG
|
A:ASN61
|
4.8
|
69.2
|
1.0
|
|
PA
|
A:ATP404
|
4.9
|
51.6
|
0.5
|
|
O2A
|
A:ATP404
|
4.9
|
50.5
|
0.5
|
|
N
|
A:LYS31
|
5.0
|
43.4
|
1.0
|
|
CA
|
A:LYS31
|
5.0
|
41.1
|
1.0
|
|
Magnesium binding site 2 out
of 8 in 4xwo
Go back to
Magnesium Binding Sites List in 4xwo
Magnesium binding site 2 out
of 8 in the Structure of GET3 Bound to the Transmembrane Domain of SEC22
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of GET3 Bound to the Transmembrane Domain of SEC22 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg401
b:54.2
occ:1.00
|
O
|
B:HOH516
|
2.0
|
56.0
|
1.0
|
|
O
|
B:HOH514
|
2.0
|
31.9
|
1.0
|
|
O3G
|
B:ATP403
|
2.0
|
42.4
|
0.5
|
|
O2B
|
B:ATP403
|
2.1
|
34.7
|
0.5
|
|
O
|
B:HOH515
|
2.1
|
25.2
|
1.0
|
|
OG1
|
B:THR32
|
2.1
|
31.1
|
1.0
|
|
O1B
|
B:ADP402
|
2.2
|
34.6
|
0.5
|
|
O3B
|
B:ADP402
|
2.7
|
40.6
|
0.5
|
|
PB
|
B:ADP402
|
3.0
|
37.6
|
0.5
|
|
PG
|
B:ATP403
|
3.1
|
46.0
|
0.5
|
|
PB
|
B:ATP403
|
3.2
|
37.1
|
0.5
|
|
CB
|
B:THR32
|
3.3
|
31.7
|
1.0
|
|
O3B
|
B:ATP403
|
3.3
|
40.6
|
0.5
|
|
O2G
|
B:ATP403
|
3.7
|
53.1
|
0.5
|
|
N
|
B:THR32
|
3.8
|
45.5
|
1.0
|
|
O2A
|
B:ADP402
|
3.8
|
42.1
|
0.5
|
|
O1B
|
B:ATP403
|
3.9
|
39.1
|
0.5
|
|
ND2
|
B:ASN61
|
3.9
|
67.1
|
1.0
|
|
O2B
|
B:ADP402
|
4.0
|
41.2
|
0.5
|
|
CA
|
B:THR32
|
4.1
|
36.9
|
1.0
|
|
OD1
|
B:ASP166
|
4.1
|
42.7
|
1.0
|
|
ND2
|
B:ASN57
|
4.1
|
58.1
|
1.0
|
|
O3A
|
B:ADP402
|
4.2
|
36.4
|
0.5
|
|
OD2
|
B:ASP166
|
4.2
|
46.2
|
1.0
|
|
O1G
|
B:ATP403
|
4.3
|
43.5
|
0.5
|
|
O1A
|
B:ATP403
|
4.3
|
41.7
|
0.5
|
|
O
|
B:HOH517
|
4.4
|
37.9
|
1.0
|
|
CG2
|
B:THR32
|
4.4
|
28.0
|
1.0
|
|
PA
|
B:ADP402
|
4.4
|
38.4
|
0.5
|
|
CB
|
B:ASN61
|
4.5
|
56.2
|
1.0
|
|
O1A
|
B:ADP402
|
4.5
|
37.4
|
0.5
|
|
O3A
|
B:ATP403
|
4.5
|
37.4
|
0.5
|
|
CG
|
B:ASN61
|
4.5
|
62.1
|
1.0
|
|
CE
|
B:LYS31
|
4.5
|
52.7
|
1.0
|
|
CB
|
B:LYS31
|
4.6
|
40.4
|
1.0
|
|
CG
|
B:ASP166
|
4.6
|
42.7
|
1.0
|
|
NZ
|
B:LYS31
|
4.7
|
63.4
|
1.0
|
|
PA
|
B:ATP403
|
4.8
|
39.2
|
0.5
|
|
O2A
|
B:ATP403
|
4.8
|
37.2
|
0.5
|
|
C
|
B:LYS31
|
4.9
|
48.1
|
1.0
|
|
Magnesium binding site 3 out
of 8 in 4xwo
Go back to
Magnesium Binding Sites List in 4xwo
Magnesium binding site 3 out
of 8 in the Structure of GET3 Bound to the Transmembrane Domain of SEC22
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of GET3 Bound to the Transmembrane Domain of SEC22 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg401
b:32.9
occ:1.00
|
O3G
|
G:ATP404
|
2.0
|
36.1
|
0.6
|
|
O
|
G:HOH517
|
2.1
|
43.4
|
1.0
|
|
O
|
G:HOH518
|
2.1
|
59.0
|
1.0
|
|
O1B
|
G:ADP403
|
2.1
|
41.5
|
0.5
|
|
O2B
|
G:ATP404
|
2.2
|
41.5
|
0.6
|
|
OG1
|
G:THR32
|
2.2
|
38.4
|
1.0
|
|
O
|
G:HOH516
|
2.3
|
36.2
|
1.0
|
|
PG
|
G:ATP404
|
3.1
|
43.5
|
0.6
|
|
O3B
|
G:ADP403
|
3.2
|
41.0
|
0.5
|
|
PB
|
G:ADP403
|
3.2
|
41.7
|
0.5
|
|
PB
|
G:ATP404
|
3.2
|
41.2
|
0.6
|
|
O3B
|
G:ATP404
|
3.3
|
40.9
|
0.6
|
|
CB
|
G:THR32
|
3.4
|
38.2
|
1.0
|
|
N
|
G:THR32
|
3.8
|
43.0
|
1.0
|
|
O1B
|
G:ATP404
|
3.9
|
41.7
|
0.6
|
|
O2G
|
G:ATP404
|
3.9
|
49.7
|
0.6
|
|
ND2
|
G:ASN61
|
4.1
|
63.1
|
1.0
|
|
OD2
|
G:ASP166
|
4.1
|
60.1
|
1.0
|
|
O2B
|
G:ADP403
|
4.1
|
42.0
|
0.5
|
|
CA
|
G:THR32
|
4.1
|
39.7
|
1.0
|
|
O1G
|
G:ATP404
|
4.1
|
37.3
|
0.6
|
|
ND2
|
G:ASN57
|
4.1
|
52.3
|
1.0
|
|
OD1
|
G:ASP166
|
4.2
|
56.9
|
1.0
|
|
O2A
|
G:ADP403
|
4.2
|
38.6
|
0.5
|
|
O3A
|
G:ADP403
|
4.4
|
40.1
|
0.5
|
|
CB
|
G:LYS31
|
4.4
|
31.8
|
1.0
|
|
O1A
|
G:ATP404
|
4.5
|
38.8
|
0.6
|
|
CG2
|
G:THR32
|
4.6
|
38.0
|
1.0
|
|
O3A
|
G:ATP404
|
4.6
|
40.3
|
0.6
|
|
CG
|
G:ASP166
|
4.6
|
56.2
|
1.0
|
|
CE
|
G:LYS31
|
4.6
|
39.5
|
1.0
|
|
CB
|
G:ASN61
|
4.7
|
52.2
|
1.0
|
|
O1A
|
G:ADP403
|
4.7
|
38.8
|
0.5
|
|
PA
|
G:ADP403
|
4.7
|
40.9
|
0.5
|
|
O
|
G:HOH519
|
4.7
|
41.1
|
1.0
|
|
CG
|
G:ASN61
|
4.8
|
59.9
|
1.0
|
|
C
|
G:LYS31
|
4.8
|
48.3
|
1.0
|
|
NZ
|
G:LYS31
|
4.8
|
35.6
|
1.0
|
|
O2A
|
G:ATP404
|
4.9
|
39.2
|
0.6
|
|
PA
|
G:ATP404
|
4.9
|
41.0
|
0.6
|
|
Magnesium binding site 4 out
of 8 in 4xwo
Go back to
Magnesium Binding Sites List in 4xwo
Magnesium binding site 4 out
of 8 in the Structure of GET3 Bound to the Transmembrane Domain of SEC22
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of GET3 Bound to the Transmembrane Domain of SEC22 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mg401
b:43.9
occ:1.00
|
O3G
|
H:ATP403
|
1.9
|
47.2
|
0.6
|
|
O
|
H:HOH521
|
2.0
|
46.2
|
1.0
|
|
O2B
|
H:ATP403
|
2.0
|
35.0
|
0.6
|
|
O1B
|
H:ADP402
|
2.1
|
36.2
|
0.4
|
|
O
|
H:HOH519
|
2.1
|
27.3
|
1.0
|
|
O
|
H:HOH520
|
2.2
|
31.0
|
1.0
|
|
OG1
|
H:THR32
|
2.2
|
34.6
|
1.0
|
|
O3B
|
H:ADP402
|
2.6
|
42.9
|
0.4
|
|
PB
|
H:ADP402
|
2.9
|
39.8
|
0.4
|
|
PG
|
H:ATP403
|
3.0
|
48.2
|
0.6
|
|
PB
|
H:ATP403
|
3.1
|
39.8
|
0.6
|
|
O3B
|
H:ATP403
|
3.2
|
42.4
|
0.6
|
|
CB
|
H:THR32
|
3.4
|
32.4
|
1.0
|
|
O2G
|
H:ATP403
|
3.7
|
52.9
|
0.6
|
|
O2A
|
H:ADP402
|
3.7
|
40.0
|
0.4
|
|
N
|
H:THR32
|
3.9
|
41.7
|
1.0
|
|
O1B
|
H:ATP403
|
3.9
|
40.5
|
0.6
|
|
O2B
|
H:ADP402
|
3.9
|
41.5
|
0.4
|
|
ND2
|
H:ASN61
|
3.9
|
57.5
|
1.0
|
|
O3A
|
H:ADP402
|
4.1
|
38.5
|
0.4
|
|
O1G
|
H:ATP403
|
4.1
|
46.4
|
0.6
|
|
CA
|
H:THR32
|
4.2
|
36.9
|
1.0
|
|
O1A
|
H:ATP403
|
4.2
|
39.2
|
0.6
|
|
OD2
|
H:ASP166
|
4.2
|
47.1
|
1.0
|
|
ND2
|
H:ASN57
|
4.2
|
48.6
|
1.0
|
|
OD1
|
H:ASP166
|
4.3
|
32.1
|
1.0
|
|
O1A
|
H:ADP402
|
4.3
|
38.3
|
0.4
|
|
PA
|
H:ADP402
|
4.3
|
38.1
|
0.4
|
|
O3A
|
H:ATP403
|
4.4
|
39.7
|
0.6
|
|
CG2
|
H:THR32
|
4.5
|
30.3
|
1.0
|
|
CE
|
H:LYS31
|
4.5
|
57.4
|
1.0
|
|
NZ
|
H:LYS31
|
4.5
|
63.3
|
1.0
|
|
CB
|
H:LYS31
|
4.6
|
39.2
|
1.0
|
|
CB
|
H:ASN61
|
4.6
|
43.7
|
1.0
|
|
CG
|
H:ASN61
|
4.6
|
51.1
|
1.0
|
|
O2A
|
H:ATP403
|
4.6
|
38.7
|
0.6
|
|
CG
|
H:ASP166
|
4.7
|
37.0
|
1.0
|
|
PA
|
H:ATP403
|
4.7
|
37.8
|
0.6
|
|
O
|
H:HOH522
|
4.8
|
28.2
|
1.0
|
|
C
|
H:LYS31
|
4.9
|
37.6
|
1.0
|
|
NZ
|
G:LYS26
|
5.0
|
64.4
|
1.0
|
|
Magnesium binding site 5 out
of 8 in 4xwo
Go back to
Magnesium Binding Sites List in 4xwo
Magnesium binding site 5 out
of 8 in the Structure of GET3 Bound to the Transmembrane Domain of SEC22
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structure of GET3 Bound to the Transmembrane Domain of SEC22 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Mg401
b:50.4
occ:1.00
|
O3G
|
M:ATP404
|
1.9
|
47.5
|
0.5
|
|
O1B
|
M:ADP403
|
1.9
|
46.5
|
0.5
|
|
O
|
M:HOH515
|
2.1
|
53.4
|
1.0
|
|
O2B
|
M:ATP404
|
2.1
|
45.5
|
0.5
|
|
OG1
|
M:THR32
|
2.1
|
38.8
|
1.0
|
|
O
|
M:HOH520
|
2.3
|
42.0
|
1.0
|
|
O
|
M:HOH516
|
2.3
|
62.8
|
1.0
|
|
PG
|
M:ATP404
|
3.1
|
45.0
|
0.5
|
|
PB
|
M:ADP403
|
3.1
|
44.3
|
0.5
|
|
PB
|
M:ATP404
|
3.3
|
44.4
|
0.5
|
|
CB
|
M:THR32
|
3.3
|
37.9
|
1.0
|
|
O3B
|
M:ADP403
|
3.4
|
44.9
|
0.5
|
|
O3B
|
M:ATP404
|
3.4
|
45.2
|
0.5
|
|
N
|
M:THR32
|
3.5
|
32.2
|
1.0
|
|
CA
|
M:THR32
|
3.9
|
35.1
|
1.0
|
|
OD2
|
M:ASP166
|
3.9
|
38.8
|
1.0
|
|
O1B
|
M:ATP404
|
3.9
|
43.9
|
0.5
|
|
O2B
|
M:ADP403
|
3.9
|
44.2
|
0.5
|
|
O2G
|
M:ATP404
|
3.9
|
40.9
|
0.5
|
|
O1G
|
M:ATP404
|
4.1
|
45.8
|
0.5
|
|
OD1
|
M:ASP166
|
4.1
|
48.0
|
1.0
|
|
O2A
|
M:ADP403
|
4.1
|
44.1
|
0.5
|
|
CB
|
M:LYS31
|
4.1
|
41.3
|
1.0
|
|
ND2
|
M:ASN61
|
4.2
|
64.5
|
1.0
|
|
ND2
|
M:ASN57
|
4.2
|
57.5
|
1.0
|
|
O1A
|
M:ATP404
|
4.2
|
43.6
|
0.5
|
|
CE
|
M:LYS31
|
4.3
|
48.6
|
1.0
|
|
O3A
|
M:ADP403
|
4.4
|
43.8
|
0.5
|
|
CG
|
M:ASP166
|
4.4
|
43.4
|
1.0
|
|
C
|
M:LYS31
|
4.4
|
36.8
|
1.0
|
|
CG2
|
M:THR32
|
4.5
|
39.3
|
1.0
|
|
O3A
|
M:ATP404
|
4.5
|
44.0
|
0.5
|
|
NZ
|
M:LYS31
|
4.6
|
54.3
|
1.0
|
|
CB
|
M:ASN61
|
4.6
|
56.4
|
1.0
|
|
O1A
|
M:ADP403
|
4.6
|
43.2
|
0.5
|
|
PA
|
M:ADP403
|
4.6
|
42.5
|
0.5
|
|
CA
|
M:LYS31
|
4.7
|
40.0
|
1.0
|
|
O2A
|
M:ATP404
|
4.8
|
42.6
|
0.5
|
|
CG
|
M:ASN61
|
4.8
|
65.4
|
1.0
|
|
PA
|
M:ATP404
|
4.8
|
42.6
|
0.5
|
|
N
|
M:LYS31
|
4.9
|
44.1
|
1.0
|
|
O
|
M:HOH517
|
5.0
|
69.2
|
1.0
|
|
Magnesium binding site 6 out
of 8 in 4xwo
Go back to
Magnesium Binding Sites List in 4xwo
Magnesium binding site 6 out
of 8 in the Structure of GET3 Bound to the Transmembrane Domain of SEC22
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Structure of GET3 Bound to the Transmembrane Domain of SEC22 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Mg401
b:50.5
occ:1.00
|
O3G
|
N:ATP403
|
1.9
|
50.5
|
0.6
|
|
O
|
N:HOH522
|
2.1
|
62.9
|
1.0
|
|
O2B
|
N:ATP403
|
2.1
|
47.9
|
0.6
|
|
OG1
|
N:THR32
|
2.2
|
39.0
|
1.0
|
|
O1B
|
N:ADP402
|
2.2
|
48.2
|
0.4
|
|
O
|
N:HOH521
|
2.4
|
47.1
|
1.0
|
|
O
|
N:HOH520
|
2.5
|
37.2
|
1.0
|
|
O3B
|
N:ADP402
|
2.9
|
49.6
|
0.4
|
|
PG
|
N:ATP403
|
3.0
|
51.0
|
0.6
|
|
PB
|
N:ADP402
|
3.1
|
47.5
|
0.4
|
|
PB
|
N:ATP403
|
3.2
|
47.1
|
0.6
|
|
O3B
|
N:ATP403
|
3.2
|
49.2
|
0.6
|
|
CB
|
N:THR32
|
3.3
|
35.0
|
1.0
|
|
O2G
|
N:ATP403
|
3.8
|
53.2
|
0.6
|
|
N
|
N:THR32
|
3.9
|
40.9
|
1.0
|
|
O1B
|
N:ATP403
|
3.9
|
48.9
|
0.6
|
|
O2A
|
N:ADP402
|
4.0
|
49.4
|
0.4
|
|
O1G
|
N:ATP403
|
4.0
|
49.8
|
0.6
|
|
CA
|
N:THR32
|
4.1
|
37.1
|
1.0
|
|
O1A
|
N:ATP403
|
4.1
|
49.0
|
0.6
|
|
O2B
|
N:ADP402
|
4.2
|
48.8
|
0.4
|
|
O
|
N:HOH523
|
4.2
|
47.7
|
1.0
|
|
ND2
|
N:ASN61
|
4.3
|
77.2
|
1.0
|
|
O3A
|
N:ADP402
|
4.3
|
49.1
|
0.4
|
|
OD2
|
N:ASP166
|
4.3
|
43.2
|
1.0
|
|
OD1
|
N:ASP166
|
4.3
|
48.3
|
1.0
|
|
ND2
|
N:ASN57
|
4.3
|
48.2
|
1.0
|
|
O3A
|
N:ATP403
|
4.4
|
49.2
|
0.6
|
|
CG2
|
N:THR32
|
4.4
|
35.3
|
1.0
|
|
CB
|
N:ASN61
|
4.5
|
64.6
|
1.0
|
|
PA
|
N:ADP402
|
4.6
|
48.6
|
0.4
|
|
O1A
|
N:ADP402
|
4.7
|
52.6
|
0.4
|
|
CG
|
N:ASN61
|
4.7
|
71.3
|
1.0
|
|
PA
|
N:ATP403
|
4.7
|
49.6
|
0.6
|
|
CB
|
N:LYS31
|
4.8
|
35.5
|
1.0
|
|
CG
|
N:ASP166
|
4.8
|
44.4
|
1.0
|
|
O2A
|
N:ATP403
|
4.8
|
52.6
|
0.6
|
|
C
|
N:LYS31
|
4.9
|
36.4
|
1.0
|
|
Magnesium binding site 7 out
of 8 in 4xwo
Go back to
Magnesium Binding Sites List in 4xwo
Magnesium binding site 7 out
of 8 in the Structure of GET3 Bound to the Transmembrane Domain of SEC22
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Structure of GET3 Bound to the Transmembrane Domain of SEC22 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Mg401
b:53.7
occ:1.00
|
O1B
|
S:ADP403
|
1.8
|
57.3
|
0.3
|
|
O3G
|
S:ATP404
|
1.9
|
56.4
|
0.7
|
|
O2B
|
S:ATP404
|
2.0
|
58.6
|
0.7
|
|
O
|
S:HOH513
|
2.1
|
67.4
|
1.0
|
|
O
|
S:HOH514
|
2.2
|
0.5
|
1.0
|
|
OG1
|
S:THR32
|
2.2
|
56.5
|
1.0
|
|
O
|
S:HOH516
|
2.3
|
59.5
|
1.0
|
|
PB
|
S:ADP403
|
3.0
|
58.7
|
0.3
|
|
PG
|
S:ATP404
|
3.1
|
59.8
|
0.7
|
|
PB
|
S:ATP404
|
3.2
|
58.8
|
0.7
|
|
O3B
|
S:ADP403
|
3.3
|
59.5
|
0.3
|
|
CB
|
S:THR32
|
3.4
|
56.7
|
1.0
|
|
O3B
|
S:ATP404
|
3.5
|
59.6
|
0.7
|
|
O2G
|
S:ATP404
|
3.8
|
59.2
|
0.7
|
|
O2B
|
S:ADP403
|
3.8
|
59.7
|
0.3
|
|
N
|
S:THR32
|
3.9
|
60.5
|
1.0
|
|
O1B
|
S:ATP404
|
3.9
|
59.5
|
0.7
|
|
O2A
|
S:ADP403
|
4.0
|
57.3
|
0.3
|
|
ND2
|
S:ASN57
|
4.0
|
89.1
|
1.0
|
|
O1A
|
S:ATP404
|
4.1
|
57.3
|
0.7
|
|
OD2
|
S:ASP166
|
4.1
|
74.4
|
1.0
|
|
O1G
|
S:ATP404
|
4.2
|
62.6
|
0.7
|
|
CA
|
S:THR32
|
4.2
|
57.1
|
1.0
|
|
O3A
|
S:ADP403
|
4.2
|
56.7
|
0.3
|
|
OD1
|
S:ASP166
|
4.3
|
79.1
|
1.0
|
|
O
|
S:HOH515
|
4.3
|
98.6
|
1.0
|
|
OD1
|
S:ASN61
|
4.5
|
0.5
|
1.0
|
|
CG2
|
S:THR32
|
4.5
|
56.1
|
1.0
|
|
O3A
|
S:ATP404
|
4.5
|
56.8
|
0.7
|
|
CE
|
S:LYS31
|
4.5
|
60.1
|
1.0
|
|
CB
|
S:LYS31
|
4.6
|
61.6
|
1.0
|
|
PA
|
S:ADP403
|
4.6
|
54.6
|
0.3
|
|
CB
|
S:ASN61
|
4.6
|
94.2
|
1.0
|
|
CG
|
S:ASP166
|
4.6
|
71.6
|
1.0
|
|
NZ
|
S:LYS31
|
4.7
|
61.8
|
1.0
|
|
O1A
|
S:ADP403
|
4.8
|
53.0
|
0.3
|
|
PA
|
S:ATP404
|
4.8
|
54.3
|
0.7
|
|
CG
|
S:ASN61
|
4.8
|
0.8
|
1.0
|
|
C
|
S:LYS31
|
4.9
|
64.4
|
1.0
|
|
O2A
|
S:ATP404
|
5.0
|
52.8
|
0.7
|
|
Magnesium binding site 8 out
of 8 in 4xwo
Go back to
Magnesium Binding Sites List in 4xwo
Magnesium binding site 8 out
of 8 in the Structure of GET3 Bound to the Transmembrane Domain of SEC22
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Structure of GET3 Bound to the Transmembrane Domain of SEC22 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
T:Mg401
b:55.6
occ:1.00
|
O1B
|
T:ADP402
|
1.9
|
50.0
|
0.4
|
|
O3G
|
T:ATP403
|
1.9
|
56.3
|
0.6
|
|
O
|
T:HOH521
|
2.0
|
50.3
|
1.0
|
|
OG1
|
T:THR32
|
2.1
|
48.1
|
1.0
|
|
O2B
|
T:ATP403
|
2.1
|
48.4
|
0.6
|
|
O
|
T:HOH519
|
2.4
|
67.2
|
1.0
|
|
O
|
T:HOH520
|
2.4
|
41.6
|
1.0
|
|
PG
|
T:ATP403
|
3.2
|
57.0
|
0.6
|
|
CB
|
T:THR32
|
3.3
|
45.1
|
1.0
|
|
PB
|
T:ADP402
|
3.3
|
51.3
|
0.4
|
|
PB
|
T:ATP403
|
3.4
|
51.2
|
0.6
|
|
ND2
|
T:ASN61
|
3.7
|
84.6
|
1.0
|
|
O3B
|
T:ATP403
|
3.7
|
54.7
|
0.6
|
|
O3B
|
T:ADP402
|
3.8
|
54.8
|
0.4
|
|
N
|
T:THR32
|
3.8
|
62.6
|
1.0
|
|
O2G
|
T:ATP403
|
4.1
|
58.8
|
0.6
|
|
CA
|
T:THR32
|
4.1
|
50.9
|
1.0
|
|
O
|
T:HOH522
|
4.1
|
62.2
|
1.0
|
|
O1G
|
T:ATP403
|
4.1
|
51.0
|
0.6
|
|
OD2
|
T:ASP166
|
4.1
|
64.8
|
1.0
|
|
ND2
|
T:ASN57
|
4.2
|
66.0
|
1.0
|
|
CB
|
T:ASN61
|
4.2
|
71.7
|
1.0
|
|
O2A
|
T:ADP402
|
4.2
|
48.9
|
0.4
|
|
OD1
|
T:ASP166
|
4.2
|
62.3
|
1.0
|
|
CG
|
T:ASN61
|
4.2
|
81.7
|
1.0
|
|
O2B
|
T:ADP402
|
4.3
|
51.0
|
0.4
|
|
O1A
|
T:ATP403
|
4.3
|
49.0
|
0.6
|
|
O3A
|
T:ADP402
|
4.3
|
48.9
|
0.4
|
|
O1B
|
T:ATP403
|
4.3
|
51.4
|
0.6
|
|
O3A
|
T:ATP403
|
4.4
|
48.7
|
0.6
|
|
CG2
|
T:THR32
|
4.4
|
40.6
|
1.0
|
|
CG
|
T:ASP166
|
4.6
|
61.5
|
1.0
|
|
CB
|
T:LYS31
|
4.7
|
56.1
|
1.0
|
|
PA
|
T:ADP402
|
4.7
|
49.8
|
0.4
|
|
PA
|
T:ATP403
|
4.8
|
49.5
|
0.6
|
|
O2A
|
T:ATP403
|
4.8
|
50.1
|
0.6
|
|
C
|
T:LYS31
|
4.9
|
65.2
|
1.0
|
|
CE
|
T:LYS31
|
4.9
|
45.6
|
1.0
|
|
O1A
|
T:ADP402
|
4.9
|
50.0
|
0.4
|
|
Reference:
A.Mateja,
M.Paduch,
H.Y.Chang,
A.Szydlowska,
A.A.Kossiakoff,
R.S.Hegde,
R.J.Keenan.
Protein Targeting. Structure of the GET3 Targeting Factor in Complex with Its Membrane Protein Cargo. Science V. 347 1152 2015.
ISSN: ESSN 1095-9203
PubMed: 25745174
DOI: 10.1126/SCIENCE.1261671
Page generated: Tue Aug 20 16:02:47 2024
|
