Atomistry » Magnesium » PDB 4xru-4y1o » 4xx6
Atomistry »
  Magnesium »
    PDB 4xru-4y1o »
      4xx6 »

Magnesium in PDB 4xx6: Crystal Structure of A Glycosylated Endo-Beta-1,4-Xylanase (Glycoside Hydrolase Family 10/GH10) Enzyme From Gloeophyllum Trabeum

Enzymatic activity of Crystal Structure of A Glycosylated Endo-Beta-1,4-Xylanase (Glycoside Hydrolase Family 10/GH10) Enzyme From Gloeophyllum Trabeum

All present enzymatic activity of Crystal Structure of A Glycosylated Endo-Beta-1,4-Xylanase (Glycoside Hydrolase Family 10/GH10) Enzyme From Gloeophyllum Trabeum:
3.2.1.8;

Protein crystallography data

The structure of Crystal Structure of A Glycosylated Endo-Beta-1,4-Xylanase (Glycoside Hydrolase Family 10/GH10) Enzyme From Gloeophyllum Trabeum, PDB code: 4xx6 was solved by P.J.Stogios, B.Nocek, X.Xu, H.Cui, M.Lowden, A.Savchenko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.20 / 1.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.414, 99.345, 147.267, 90.00, 90.00, 90.00
R / Rfree (%) 15.4 / 20.4

Other elements in 4xx6:

The structure of Crystal Structure of A Glycosylated Endo-Beta-1,4-Xylanase (Glycoside Hydrolase Family 10/GH10) Enzyme From Gloeophyllum Trabeum also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Glycosylated Endo-Beta-1,4-Xylanase (Glycoside Hydrolase Family 10/GH10) Enzyme From Gloeophyllum Trabeum (pdb code 4xx6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Glycosylated Endo-Beta-1,4-Xylanase (Glycoside Hydrolase Family 10/GH10) Enzyme From Gloeophyllum Trabeum, PDB code: 4xx6:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4xx6

Go back to Magnesium Binding Sites List in 4xx6
Magnesium binding site 1 out of 2 in the Crystal Structure of A Glycosylated Endo-Beta-1,4-Xylanase (Glycoside Hydrolase Family 10/GH10) Enzyme From Gloeophyllum Trabeum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Glycosylated Endo-Beta-1,4-Xylanase (Glycoside Hydrolase Family 10/GH10) Enzyme From Gloeophyllum Trabeum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg424

b:21.0
occ:1.00
 O A:HOH672 2.1 16.0 1.0
O B:HOH652 2.1 15.7 1.0
O A:HOH671 2.1 16.8 1.0
O B:HOH653 2.1 20.1 1.0
O B:HOH654 2.1 22.5 1.0
OD1 A:ASP106 2.2 20.5 1.0
CG A:ASP106 3.2 41.3 1.0
CA A:ASP106 3.9 24.8 1.0
OD2 A:ASP106 4.0 43.1 1.0
ND2 A:ASN152 4.1 21.5 1.0
O2 B:MAN411 4.1 20.6 1.0
CB A:ASP106 4.2 30.2 1.0
O B:HOH655 4.2 23.9 1.0
O A:HOH721 4.3 16.1 1.0
O A:HOH720 4.3 18.2 1.0
O B:HOH617 4.4 15.9 1.0
O B:HOH673 4.4 40.4 1.0
O4 B:MAN412 4.4 25.9 1.0
O3 B:MAN414 4.4 34.5 1.0
O A:ALA103 4.5 13.6 1.0
O A:TYR107 4.5 18.6 1.0
C A:ASP106 4.6 23.1 1.0
CA A:ALA103 4.6 14.0 1.0
CB A:ASN152 4.7 14.5 1.0
C3 B:MAN414 4.9 33.6 1.0
CG A:ASN152 4.9 25.4 1.0
C5 B:MAN412 4.9 22.9 1.0
N A:ASP106 4.9 13.4 1.0
O A:HOH675 5.0 21.1 1.0

Magnesium binding site 2 out of 2 in 4xx6

Go back to Magnesium Binding Sites List in 4xx6
Magnesium binding site 2 out of 2 in the Crystal Structure of A Glycosylated Endo-Beta-1,4-Xylanase (Glycoside Hydrolase Family 10/GH10) Enzyme From Gloeophyllum Trabeum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Glycosylated Endo-Beta-1,4-Xylanase (Glycoside Hydrolase Family 10/GH10) Enzyme From Gloeophyllum Trabeum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg420

b:23.6
occ:1.00
 O B:HOH609 2.0 23.6 1.0
O A:HOH621 2.1 24.0 1.0
O A:HOH620 2.1 16.4 1.0
O A:HOH622 2.1 23.2 1.0
O B:HOH608 2.1 17.9 1.0
O B:HOH607 2.1 13.6 1.0
OD1 B:ASP106 3.4 72.5 1.0
O A:HOH663 4.0 40.4 1.0
CA B:ASP106 4.1 14.9 1.0
O B:HOH718 4.2 16.1 1.0
O2 A:MAN413 4.3 20.9 1.0
OD1 B:ASN152 4.3 29.6 1.0
CG B:ASP106 4.3 57.1 1.0
O A:HOH683 4.3 28.4 1.0
O4 A:MAN414 4.4 34.5 1.0
O B:ALA103 4.4 12.8 1.0
O B:TYR107 4.5 11.0 1.0
O3 A:MAN416 4.5 41.9 1.0
O B:HOH719 4.5 19.4 1.0
CA B:ALA103 4.5 13.4 1.0
C B:ASP106 4.6 16.3 1.0
O B:HOH684 4.7 45.0 1.0
CB B:ASN152 4.7 21.2 1.0
CB B:ASP106 4.9 29.6 1.0
N B:TYR107 4.9 10.4 1.0
C3 A:MAN416 4.9 41.7 1.0
C B:ALA103 5.0 16.4 1.0
CG B:ASN152 5.0 24.5 1.0

Reference:

P.J.Stogios, X.Xu, H.Cui, M.Lowden, A.Savchenko. Crystal Structure of A Glycosylated Endo-Beta-1,4-Xylanase (Glycoside Hydrolase Family 10/GH10) Enzyme From Gloeophyllum Trabeum. To Be Published.
Page generated: Mon Dec 14 19:48:43 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy