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Magnesium in PDB 4xx6: Crystal Structure of A Glycosylated Endo-Beta-1,4-Xylanase (Glycoside Hydrolase Family 10/GH10) Enzyme From Gloeophyllum Trabeum

Enzymatic activity of Crystal Structure of A Glycosylated Endo-Beta-1,4-Xylanase (Glycoside Hydrolase Family 10/GH10) Enzyme From Gloeophyllum Trabeum

All present enzymatic activity of Crystal Structure of A Glycosylated Endo-Beta-1,4-Xylanase (Glycoside Hydrolase Family 10/GH10) Enzyme From Gloeophyllum Trabeum:
3.2.1.8;

Protein crystallography data

The structure of Crystal Structure of A Glycosylated Endo-Beta-1,4-Xylanase (Glycoside Hydrolase Family 10/GH10) Enzyme From Gloeophyllum Trabeum, PDB code: 4xx6 was solved by P.J.Stogios, B.Nocek, X.Xu, H.Cui, M.Lowden, A.Savchenko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.20 / 1.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.414, 99.345, 147.267, 90.00, 90.00, 90.00
R / Rfree (%) 15.4 / 20.4

Other elements in 4xx6:

The structure of Crystal Structure of A Glycosylated Endo-Beta-1,4-Xylanase (Glycoside Hydrolase Family 10/GH10) Enzyme From Gloeophyllum Trabeum also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Glycosylated Endo-Beta-1,4-Xylanase (Glycoside Hydrolase Family 10/GH10) Enzyme From Gloeophyllum Trabeum (pdb code 4xx6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Glycosylated Endo-Beta-1,4-Xylanase (Glycoside Hydrolase Family 10/GH10) Enzyme From Gloeophyllum Trabeum, PDB code: 4xx6:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4xx6

Go back to Magnesium Binding Sites List in 4xx6
Magnesium binding site 1 out of 2 in the Crystal Structure of A Glycosylated Endo-Beta-1,4-Xylanase (Glycoside Hydrolase Family 10/GH10) Enzyme From Gloeophyllum Trabeum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Glycosylated Endo-Beta-1,4-Xylanase (Glycoside Hydrolase Family 10/GH10) Enzyme From Gloeophyllum Trabeum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg424

b:21.0
occ:1.00
O A:HOH672 2.1 16.0 1.0
O B:HOH652 2.1 15.7 1.0
O A:HOH671 2.1 16.8 1.0
O B:HOH653 2.1 20.1 1.0
O B:HOH654 2.1 22.5 1.0
OD1 A:ASP106 2.2 20.5 1.0
CG A:ASP106 3.2 41.3 1.0
CA A:ASP106 3.9 24.8 1.0
OD2 A:ASP106 4.0 43.1 1.0
ND2 A:ASN152 4.1 21.5 1.0
O2 B:MAN411 4.1 20.6 1.0
CB A:ASP106 4.2 30.2 1.0
O B:HOH655 4.2 23.9 1.0
O A:HOH721 4.3 16.1 1.0
O A:HOH720 4.3 18.2 1.0
O B:HOH617 4.4 15.9 1.0
O B:HOH673 4.4 40.4 1.0
O4 B:MAN412 4.4 25.9 1.0
O3 B:MAN414 4.4 34.5 1.0
O A:ALA103 4.5 13.6 1.0
O A:TYR107 4.5 18.6 1.0
C A:ASP106 4.6 23.1 1.0
CA A:ALA103 4.6 14.0 1.0
CB A:ASN152 4.7 14.5 1.0
C3 B:MAN414 4.9 33.6 1.0
CG A:ASN152 4.9 25.4 1.0
C5 B:MAN412 4.9 22.9 1.0
N A:ASP106 4.9 13.4 1.0
O A:HOH675 5.0 21.1 1.0

Magnesium binding site 2 out of 2 in 4xx6

Go back to Magnesium Binding Sites List in 4xx6
Magnesium binding site 2 out of 2 in the Crystal Structure of A Glycosylated Endo-Beta-1,4-Xylanase (Glycoside Hydrolase Family 10/GH10) Enzyme From Gloeophyllum Trabeum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Glycosylated Endo-Beta-1,4-Xylanase (Glycoside Hydrolase Family 10/GH10) Enzyme From Gloeophyllum Trabeum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg420

b:23.6
occ:1.00
O B:HOH609 2.0 23.6 1.0
O A:HOH621 2.1 24.0 1.0
O A:HOH620 2.1 16.4 1.0
O A:HOH622 2.1 23.2 1.0
O B:HOH608 2.1 17.9 1.0
O B:HOH607 2.1 13.6 1.0
OD1 B:ASP106 3.4 72.5 1.0
O A:HOH663 4.0 40.4 1.0
CA B:ASP106 4.1 14.9 1.0
O B:HOH718 4.2 16.1 1.0
O2 A:MAN413 4.3 20.9 1.0
OD1 B:ASN152 4.3 29.6 1.0
CG B:ASP106 4.3 57.1 1.0
O A:HOH683 4.3 28.4 1.0
O4 A:MAN414 4.4 34.5 1.0
O B:ALA103 4.4 12.8 1.0
O B:TYR107 4.5 11.0 1.0
O3 A:MAN416 4.5 41.9 1.0
O B:HOH719 4.5 19.4 1.0
CA B:ALA103 4.5 13.4 1.0
C B:ASP106 4.6 16.3 1.0
O B:HOH684 4.7 45.0 1.0
CB B:ASN152 4.7 21.2 1.0
CB B:ASP106 4.9 29.6 1.0
N B:TYR107 4.9 10.4 1.0
C3 A:MAN416 4.9 41.7 1.0
C B:ALA103 5.0 16.4 1.0
CG B:ASN152 5.0 24.5 1.0

Reference:

P.J.Stogios, X.Xu, H.Cui, M.Lowden, A.Savchenko. Crystal Structure of A Glycosylated Endo-Beta-1,4-Xylanase (Glycoside Hydrolase Family 10/GH10) Enzyme From Gloeophyllum Trabeum. To Be Published.
Page generated: Mon Dec 14 19:48:43 2020

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