Magnesium in PDB 4y7u: Structural Analysis of Muru

The structure of Structural Analysis of Muru, PDB code: 4y7u was solved by M.G.Renner-Schneck, T.Stehle, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.86 / 1.70
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	72.750, 72.750, 163.130, 90.00, 90.00, 120.00
R / Rfree (%)	22.8 / 26.4

The binding sites of Magnesium atom in the Structural Analysis of Muru (pdb code 4y7u). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structural Analysis of Muru, PDB code: 4y7u:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structural Analysis of Muru


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structural Analysis of Muru within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg304 b:60.7 occ:0.82 OD1 A:ASP205 2.7 50.4 1.0 OD2 A:ASP107 2.8 62.1 1.0 NZ A:LYS23 3.0 70.7 1.0 CA A:GLY207 3.5 52.1 1.0 CB A:ASP107 3.6 48.5 1.0 CG A:ASP205 3.6 57.7 1.0 CG A:ASP107 3.6 61.4 1.0 NH1 A:ARG13 3.7 79.3 1.0 O20 A:491307 3.8 90.3 0.7 O1A A:2KH306 3.8 0.8 0.7 OD2 A:ASP205 3.8 62.5 1.0 N A:GLY207 3.9 48.8 1.0 O A:VAL206 4.1 52.2 1.0 C A:VAL206 4.1 47.0 1.0 O5' A:2KH306 4.1 95.5 0.7 CE A:LYS23 4.2 65.6 1.0 C5' A:2KH306 4.2 93.6 0.7 O19 A:491307 4.4 87.2 0.7 PA A:2KH306 4.5 0.4 0.7 P17 A:491307 4.6 88.9 0.7 N A:VAL206 4.7 42.0 1.0 C A:ASP205 4.8 42.1 1.0 O2G A:2KH306 4.8 97.4 0.7 O2B A:2KH306 4.8 0.1 0.7 OD1 A:ASP107 4.8 56.6 1.0 CB A:ASP205 4.9 50.5 1.0 C A:GLY207 4.9 56.2 1.0 O A:ASP205 4.9 45.6 1.0 CZ A:ARG13 5.0 80.9 1.0 O18 A:491307 5.0 91.0 0.7

Magnesium binding site 2 out of 2 in the Structural Analysis of Muru


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structural Analysis of Muru within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg305 b:77.2 occ:1.00 O1B A:2KH306 2.4 89.8 0.7 N3A A:2KH306 2.7 0.2 0.7 N A:LYS10 2.9 51.0 1.0 PB A:2KH306 3.0 0.9 0.7 CA A:GLY9 3.4 53.7 1.0 C A:GLY9 3.6 56.4 1.0 O2B A:2KH306 3.7 0.1 0.7 CA A:LYS10 3.9 48.2 1.0 C5 A:2KH306 4.0 89.7 0.7 CB A:LYS10 4.0 53.4 1.0 N A:GLY11 4.2 50.3 1.0 C6 A:2KH306 4.2 89.8 0.7 O3B A:2KH306 4.3 0.1 0.7 PA A:2KH306 4.3 0.4 0.7 C A:LYS10 4.6 51.8 1.0 O1G A:2KH306 4.7 97.4 0.7 N A:GLY9 4.8 50.4 1.0 O A:GLY9 4.8 53.6 1.0 O2A A:2KH306 4.9 0.7 0.7 C5' A:2KH306 5.0 93.6 0.7 C4 A:2KH306 5.0 89.2 0.7

M.G.Renner-Schneck, I.Hinderberger, J.Gisin, T.E.Exner, C.Mayer, T.Stehle. Crystal Structure of the N-Acetylmuramic Acid Alpha-1-Phosphate (Murnac-Alpha 1P) Uridylytransferase Muru, A Minimal Sugar-Nucleotidyltransferase and Potential Drug Target Enzyme in Gram-Negative Pathogens J.Biol.Chem. 2015.
ISSN: ESSN 1083-351X