Magnesium in PDB 4ydq: Crystal Structure of Prolyl-Trna Synthetase (Prs) From Plasmodium Falciparum in Complex with Halofuginone and Amppnp

Enzymatic activity of Crystal Structure of Prolyl-Trna Synthetase (Prs) From Plasmodium Falciparum in Complex with Halofuginone and Amppnp

Protein crystallography data

Other elements in 4ydq:

Magnesium Binding Sites:

Magnesium binding site 1 out of 2 in 4ydq

Magnesium Binding Sites List in 4ydq

Magnesium binding site 1 out of 2 in the Crystal Structure of Prolyl-Trna Synthetase (Prs) From Plasmodium Falciparum in Complex with Halofuginone and Amppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Prolyl-Trna Synthetase (Prs) From Plasmodium Falciparum in Complex with Halofuginone and Amppnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg803 b:45.7 occ:1.00 O1G A:ANP801 1.9 46.9 1.0 O A:HOH1070 1.9 46.5 1.0 O A:HOH1066 2.0 41.0 1.0 O2B A:ANP801 2.2 43.8 1.0 O A:HOH1065 2.3 38.3 1.0 O A:HOH940 2.4 29.8 1.0 PG A:ANP801 3.3 57.9 1.0 PB A:ANP801 3.4 41.3 1.0 N3B A:ANP801 3.8 0.6 1.0 NZ A:LYS394 3.9 51.0 1.0 O1B A:ANP801 4.0 44.9 1.0 NH1 A:ARG390 4.0 27.9 1.0 O3G A:ANP801 4.1 40.0 1.0 OE1 A:GLU338 4.1 39.1 1.0 N1 A:HFG802 4.1 32.0 0.9 NH1 A:ARG401 4.3 33.5 1.0 OE2 A:GLU392 4.4 30.6 1.0 O2G A:ANP801 4.4 44.3 1.0 OE2 A:GLU338 4.4 43.8 1.0 OE1 A:GLU392 4.5 37.9 1.0 C2 A:HFG802 4.5 35.4 0.9 O3A A:ANP801 4.6 40.7 1.0 N7 A:ANP801 4.7 30.6 1.0 CD A:GLU338 4.7 41.8 1.0 CE A:LYS394 4.9 51.5 1.0 CD A:ARG390 4.9 29.1 1.0 CD A:GLU392 4.9 35.1 1.0 CE1 A:PHE335 4.9 41.3 1.0

Magnesium binding site 2 out of 2 in 4ydq

Magnesium Binding Sites List in 4ydq

Magnesium binding site 2 out of 2 in the Crystal Structure of Prolyl-Trna Synthetase (Prs) From Plasmodium Falciparum in Complex with Halofuginone and Amppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Prolyl-Trna Synthetase (Prs) From Plasmodium Falciparum in Complex with Halofuginone and Amppnp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg803 b:56.1 occ:1.00 O2G B:ANP801 2.1 62.5 0.9 O B:HOH1012 2.3 44.6 1.0 O B:HOH1023 2.5 62.8 1.0 N1 B:HFG802 3.3 36.9 0.9 OE1 B:GLU338 3.5 56.2 1.0 PG B:ANP801 3.7 76.3 0.9 O2B B:ANP801 3.8 46.8 0.9 NH1 B:ARG390 3.8 31.6 1.0 CD B:ARG390 4.0 40.0 1.0 C2 B:HFG802 4.0 39.1 0.9 OE2 B:GLU338 4.3 71.1 1.0 O B:HOH1034 4.3 48.2 0.8 CD B:GLU338 4.3 69.5 1.0 C9 B:HFG802 4.4 37.9 0.9 C8 B:HFG802 4.5 38.0 0.9 N3B B:ANP801 4.5 50.3 0.9 O1G B:ANP801 4.5 73.9 0.9 PB B:ANP801 4.6 42.3 0.9 O3G B:ANP801 4.6 70.5 0.9 CZ B:ARG390 4.6 37.9 1.0 OE1 B:GLU392 4.7 75.0 1.0 NE B:ARG390 4.7 31.3 1.0 O3A B:ANP801 4.7 44.2 0.9 N7 B:ANP801 4.9 39.8 0.9 NH1 B:ARG401 5.0 53.6 1.0 CG B:ARG390 5.0 40.0 1.0

Reference: