Atomistry » Magnesium » PDB 4yf6-4yoy » 4yf6
Atomistry »
  Magnesium »
    PDB 4yf6-4yoy »
      4yf6 »

Magnesium in PDB 4yf6: Crystal Structure of Oxidised RV1284

Enzymatic activity of Crystal Structure of Oxidised RV1284

All present enzymatic activity of Crystal Structure of Oxidised RV1284:
4.2.1.1;

Protein crystallography data

The structure of Crystal Structure of Oxidised RV1284, PDB code: 4yf6 was solved by A.Hofmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.39 / 3.00
Space group F 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 101.068, 153.947, 157.174, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 26

Other elements in 4yf6:

The structure of Crystal Structure of Oxidised RV1284 also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Zinc (Zn) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Oxidised RV1284 (pdb code 4yf6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Oxidised RV1284, PDB code: 4yf6:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4yf6

Go back to Magnesium Binding Sites List in 4yf6
Magnesium binding site 1 out of 2 in the Crystal Structure of Oxidised RV1284


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Oxidised RV1284 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg201

b:37.0
occ:1.00
O A:GLU135 2.7 15.0 1.0
O A:VAL140 2.8 6.9 1.0
O A:ILE134 2.8 7.2 1.0
O A:ASN137 3.3 11.7 1.0
C A:GLU135 3.5 15.0 1.0
CA A:GLU135 3.7 15.0 1.0
C A:ILE134 3.8 7.2 1.0
CE1 A:HIS143 3.8 26.2 1.0
C A:VAL140 3.9 6.9 1.0
N A:GLU135 4.2 15.0 1.0
CA A:THR141 4.3 26.0 1.0
NE2 A:HIS143 4.3 26.2 1.0
C A:ASN137 4.5 11.7 1.0
CG2 A:THR141 4.5 4.5 1.0
OE1 A:GLU135 4.5 59.8 1.0
N A:THR141 4.6 26.0 1.0
CG2 A:ILE134 4.6 3.8 1.0
N A:ASN137 4.7 11.7 1.0
N A:VAL136 4.7 9.9 1.0
CB A:THR141 4.8 4.5 1.0
ND1 A:HIS143 4.9 26.2 1.0
C A:VAL136 5.0 9.9 1.0

Magnesium binding site 2 out of 2 in 4yf6

Go back to Magnesium Binding Sites List in 4yf6
Magnesium binding site 2 out of 2 in the Crystal Structure of Oxidised RV1284


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Oxidised RV1284 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg201

b:37.0
occ:1.00
O C:GLU135 2.1 39.4 1.0
C C:GLU135 3.1 39.4 1.0
O C:ASN137 3.3 18.6 1.0
CG2 C:THR141 3.5 9.1 1.0
CA C:GLU135 3.5 39.4 1.0
O C:VAL140 3.7 5.6 1.0
O C:ILE134 3.8 32.9 1.0
C C:ASN137 4.3 18.6 1.0
N C:VAL136 4.3 12.5 1.0
N C:ASN137 4.3 18.6 1.0
CB C:THR141 4.5 9.1 1.0
N C:GLU135 4.5 39.4 1.0
CB C:GLU135 4.6 76.6 1.0
C C:ILE134 4.6 32.9 1.0
CA C:THR141 4.6 23.9 1.0
C C:VAL140 4.7 5.6 1.0
C C:VAL136 4.8 12.5 1.0
CA C:VAL136 4.8 12.5 1.0
CA C:ASN137 4.9 18.6 1.0

Reference:

L.Nienaber, E.Cave-Freeman, M.Cross, L.Mason, U.M.Bailey, P.Amani, R.Davis, P.Taylor, A.Hofmann. Chemical Probing Suggests Redox-Regulation of the Carbonic Anhydrase Activity of Mycobacterial RV1284. Febs J. 2015.
ISSN: ISSN 1742-464X
PubMed: 25929542
DOI: 10.1111/FEBS.13313
Page generated: Sat Sep 28 23:17:41 2024

Last articles

Ca in 5S4N
Ca in 5S4M
Ca in 5S4L
Ca in 5QJ2
Ca in 5QJ3
Ca in 5PTP
Ca in 5PB6
Ca in 5PB5
Ca in 5PB4
Ca in 5PB3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy