Magnesium in PDB 4ymu: Crystal Structure of An Amino Acid Abc Transporter Complex with Arginines and Atps

The structure of Crystal Structure of An Amino Acid Abc Transporter Complex with Arginines and Atps, PDB code: 4ymu was solved by J.Ge, J.Yu, M.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.50 / 2.50
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	96.765, 114.098, 298.636, 90.00, 90.00, 90.00
R / Rfree (%)	22.4 / 26

The binding sites of Magnesium atom in the Crystal Structure of An Amino Acid Abc Transporter Complex with Arginines and Atps (pdb code 4ymu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of An Amino Acid Abc Transporter Complex with Arginines and Atps, PDB code: 4ymu:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of An Amino Acid Abc Transporter Complex with Arginines and Atps


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of An Amino Acid Abc Transporter Complex with Arginines and Atps within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg302 b:84.7 occ:1.00 O3G J:ATP301 2.3 83.5 1.0 OG J:SER41 2.3 62.9 1.0 O2B J:ATP301 2.4 65.4 1.0 O2A J:ATP301 2.4 64.3 1.0 CB J:SER41 2.9 64.0 1.0 OE2 J:GLU162 3.0 77.7 1.0 PB J:ATP301 3.4 71.8 1.0 PG J:ATP301 3.5 74.6 1.0 O3B J:ATP301 3.6 68.8 1.0 OE1 J:GLU162 3.6 68.6 1.0 PA J:ATP301 3.6 73.0 1.0 CD J:GLU162 3.6 69.1 1.0 O3A J:ATP301 4.0 64.8 1.0 CA J:SER41 4.2 75.5 1.0 N J:SER41 4.2 66.7 1.0 OD2 J:ASP161 4.4 68.2 1.0 O1G J:ATP301 4.4 72.3 1.0 O1A J:ATP301 4.4 78.7 1.0 O2G J:ATP301 4.5 86.0 1.0 O1B J:ATP301 4.8 66.1 1.0 O5' J:ATP301 4.8 72.2 1.0 CG J:GLU162 5.0 66.6 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of An Amino Acid Abc Transporter Complex with Arginines and Atps


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of An Amino Acid Abc Transporter Complex with Arginines and Atps within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:96.8 occ:1.00 O3G A:ATP301 2.4 96.5 1.0 O1A A:ATP301 2.7 80.1 1.0 OG A:SER41 2.8 78.3 1.0 O2B A:ATP301 2.9 72.4 1.0 OE2 A:GLU162 3.0 97.0 1.0 CB A:SER41 3.2 74.4 1.0 PG A:ATP301 3.9 91.7 1.0 PB A:ATP301 4.0 78.6 1.0 CD A:GLU162 4.0 88.2 1.0 PA A:ATP301 4.1 82.5 1.0 O3B A:ATP301 4.1 77.9 1.0 OE1 A:GLU162 4.3 96.8 1.0 OD2 A:ASP161 4.4 73.6 1.0 O3A A:ATP301 4.5 0.3 1.0 CA A:SER41 4.6 76.6 1.0 OE1 A:GLN84 4.7 83.9 1.0 O1G A:ATP301 4.8 90.5 1.0 O2G A:ATP301 4.8 89.6 1.0 N A:SER41 4.9 70.6 1.0 OD1 A:ASP161 4.9 92.7 1.0

J.Yu, J.Ge, J.Heuveling, E.Schneider, M.Yang. Structural Basis For Substrate Specificity of An Amino Acid Abc Transporter Proc.Natl.Acad.Sci.Usa V. 112 5243 2015.
ISSN: ESSN 1091-6490
PubMed: 25848002
DOI: 10.1073/PNAS.1415037112