Magnesium in PDB 4yn0: Crystal Structure of App E2 Domain in Complex with DR6 Crd Domain

The structure of Crystal Structure of App E2 Domain in Complex with DR6 Crd Domain, PDB code: 4yn0 was solved by K.Xu, D.Nikolov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.60 / 2.20
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	67.320, 67.320, 226.229, 90.00, 90.00, 120.00
R / Rfree (%)	22.6 / 24.5

The binding sites of Magnesium atom in the Crystal Structure of App E2 Domain in Complex with DR6 Crd Domain (pdb code 4yn0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of App E2 Domain in Complex with DR6 Crd Domain, PDB code: 4yn0:

Magnesium binding site 1 out of 1 in the Crystal Structure of App E2 Domain in Complex with DR6 Crd Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of App E2 Domain in Complex with DR6 Crd Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:45.2 occ:1.00 O A:HOH441 2.2 54.1 1.0 OG A:SER177 2.3 47.0 1.0 O A:VAL179 2.3 48.7 1.0 O A:TRP154 2.3 40.7 1.0 O A:CYS150 2.5 43.3 1.0 O A:PRO151 2.7 40.9 1.0 CB A:SER177 3.3 46.5 1.0 C A:PRO151 3.3 39.9 1.0 C A:CYS150 3.5 45.4 1.0 C A:TRP154 3.5 42.0 1.0 C A:VAL179 3.5 49.1 1.0 N A:VAL152 3.9 40.4 1.0 CA A:PRO180 4.0 48.5 1.0 CB A:CYS150 4.1 44.8 1.0 CA A:PRO151 4.1 43.6 1.0 N A:SER181 4.1 49.5 1.0 N A:PRO151 4.1 39.4 1.0 N A:TRP154 4.2 41.4 1.0 N A:PRO180 4.2 49.3 1.0 CA A:VAL152 4.3 44.8 1.0 CA A:TRP154 4.3 44.6 1.0 CA A:CYS150 4.4 39.7 1.0 N A:GLY155 4.4 43.6 1.0 N A:VAL179 4.5 54.1 1.0 CA A:GLY155 4.5 50.5 1.0 O A:HOH448 4.5 56.5 1.0 C A:PRO180 4.5 50.8 1.0 CA A:VAL179 4.6 47.3 1.0 CA A:SER177 4.6 48.8 1.0 O A:SER181 4.7 50.0 1.0 C A:SER177 4.7 49.2 1.0 CB A:TRP154 4.8 41.5 1.0 O A:SER177 4.8 47.2 1.0 C A:VAL152 4.8 41.0 1.0 N A:GLY153 4.8 41.2 1.0

K.Xu, O.Olsen, D.Tzvetkova-Robev, M.Tessier-Lavigne, D.B.Nikolov. The Crystal Structure of DR6 in Complex with the Amyloid Precursor Protein Provides Insight Into Death Receptor Activation. Genes Dev. V. 29 785 2015.
ISSN: ISSN 0890-9369
PubMed: 25838500
DOI: 10.1101/GAD.257675.114