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Magnesium in PDB 4yok: Crystal Structure of A DUF3823 Family Protein (PARMER_04126) From Parabacteroides Merdae Atcc 43184 at 1.80 A Resolution

Protein crystallography data

The structure of Crystal Structure of A DUF3823 Family Protein (PARMER_04126) From Parabacteroides Merdae Atcc 43184 at 1.80 A Resolution, PDB code: 4yok was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.53 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.866, 66.212, 68.593, 90.00, 90.00, 90.00
R / Rfree (%) 17.3 / 21.4

Other elements in 4yok:

The structure of Crystal Structure of A DUF3823 Family Protein (PARMER_04126) From Parabacteroides Merdae Atcc 43184 at 1.80 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A DUF3823 Family Protein (PARMER_04126) From Parabacteroides Merdae Atcc 43184 at 1.80 A Resolution (pdb code 4yok). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of A DUF3823 Family Protein (PARMER_04126) From Parabacteroides Merdae Atcc 43184 at 1.80 A Resolution, PDB code: 4yok:

Magnesium binding site 1 out of 1 in 4yok

Go back to Magnesium Binding Sites List in 4yok
Magnesium binding site 1 out of 1 in the Crystal Structure of A DUF3823 Family Protein (PARMER_04126) From Parabacteroides Merdae Atcc 43184 at 1.80 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A DUF3823 Family Protein (PARMER_04126) From Parabacteroides Merdae Atcc 43184 at 1.80 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:24.9
occ:1.00
O A:HOH416 2.0 28.5 1.0
OE1 A:GLU104 2.0 33.8 1.0
O A:HOH439 2.1 24.5 1.0
CD A:GLU104 3.2 41.6 1.0
OE2 A:GLU104 3.9 37.7 1.0
O A:HOH429 4.1 47.1 1.0
O A:SER105 4.2 25.8 1.0
O A:GLU119 4.2 20.8 1.0
CG A:GLU104 4.2 29.2 1.0
CB A:GLU104 4.4 22.2 1.0
N A:SER105 4.4 23.4 1.0
O A:HOH469 4.5 40.8 1.0
CA A:GLU104 4.6 22.1 1.0
O A:HOH457 4.6 49.8 1.0
O A:HOH405 4.8 37.1 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Mon Dec 14 19:55:13 2020

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