Magnesium in PDB 4ypm: Crystal Structure of A Lona Protease Domain in Complex with Bortezomib

All present enzymatic activity of Crystal Structure of A Lona Protease Domain in Complex with Bortezomib:
3.4.21.53;

The structure of Crystal Structure of A Lona Protease Domain in Complex with Bortezomib, PDB code: 4ypm was solved by C.-C.Lin, C.-I.Chang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.85 / 1.85
Space group	P 6 2 2
Cell size a, b, c (Å), α, β, γ (°)	122.343, 122.343, 103.125, 90.00, 90.00, 120.00
R / Rfree (%)	17.7 / 20.1

The binding sites of Magnesium atom in the Crystal Structure of A Lona Protease Domain in Complex with Bortezomib (pdb code 4ypm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of A Lona Protease Domain in Complex with Bortezomib, PDB code: 4ypm:

Magnesium binding site 1 out of 1 in the Crystal Structure of A Lona Protease Domain in Complex with Bortezomib


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Lona Protease Domain in Complex with Bortezomib within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:25.3 occ:1.00 OG A:SER678 2.6 15.5 1.0 OG1 A:THR703 2.6 16.6 1.0 O A:LEU600 2.6 15.9 1.0 O A:HOH987 2.7 12.8 1.0 O A:SER678 2.9 14.2 1.0 C A:SER678 3.3 13.2 1.0 CB A:SER678 3.4 13.7 1.0 CB A:THR703 3.4 15.2 1.0 B26 A:BO2801 3.7 16.2 1.0 NZ A:LYS721 3.7 14.5 1.0 C24 A:BO2801 3.8 16.8 1.0 C21 A:BO2801 3.8 16.3 1.0 C A:LEU600 3.8 15.8 1.0 CA A:THR703 3.9 14.1 1.0 N A:ALA679 3.9 12.7 1.0 C22 A:BO2801 3.9 15.9 1.0 CE A:LYS721 4.0 15.3 1.0 CA A:SER678 4.0 13.8 1.0 O27 A:BO2801 4.1 16.2 1.0 N A:LEU600 4.1 14.8 1.0 CA A:ALA679 4.3 12.7 1.0 O A:MET702 4.3 11.5 1.0 CA A:LEU600 4.4 15.2 1.0 C23 A:BO2801 4.5 15.8 1.0 CB A:ALA679 4.6 12.8 1.0 N A:GLY704 4.6 12.7 1.0 CD A:LYS721 4.7 15.4 1.0 CB A:LEU600 4.7 16.1 1.0 C A:THR703 4.8 13.9 1.0 CG2 A:THR703 4.8 15.2 1.0 N A:ALA601 4.9 15.6 1.0 O28 A:BO2801 4.9 15.9 1.0 N A:THR703 5.0 13.7 1.0

S.-C.Su, C.-C.Lin, H.-C.Tai, M.-Y.Chang, M.-R.Ho, C.S.Babu, J.-H.Liao, S.-H.Wu, Y.-C.Chang, C.Lim, C.-I.Chang. Structural Basis For the Magnesium-Dependent Activation and Hexamerization of the Lon Aaa+ Protease Structure V. 24 676 2016.
ISSN: ISSN 0969-2126
PubMed: 27041593
DOI: 10.1016/J.STR.2016.03.003