Magnesium in PDB 4ys0: Conformational Changes of the Clamp of the Protein Translocation Atpase Seca From Thermotoga Maritima

The structure of Conformational Changes of the Clamp of the Protein Translocation Atpase Seca From Thermotoga Maritima, PDB code: 4ys0 was solved by Y.Chen, T.A.Rapoport, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.92 / 1.90
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	64.404, 110.160, 115.863, 90.00, 90.00, 90.00
R / Rfree (%)	17.9 / 22.6

The binding sites of Magnesium atom in the Conformational Changes of the Clamp of the Protein Translocation Atpase Seca From Thermotoga Maritima (pdb code 4ys0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Conformational Changes of the Clamp of the Protein Translocation Atpase Seca From Thermotoga Maritima, PDB code: 4ys0:

Magnesium binding site 1 out of 1 in the Conformational Changes of the Clamp of the Protein Translocation Atpase Seca From Thermotoga Maritima


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Conformational Changes of the Clamp of the Protein Translocation Atpase Seca From Thermotoga Maritima within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg902 b:18.0 occ:1.00 O1B A:ADP901 2.1 14.3 1.0 O A:HOH1073 2.1 16.2 1.0 O A:HOH1044 2.1 15.0 1.0 O A:HOH1099 2.1 16.4 1.0 O A:HOH1086 2.2 15.2 1.0 O A:HOH1168 2.3 15.9 1.0 PB A:ADP901 3.3 13.9 1.0 O2B A:ADP901 3.6 14.9 1.0 OE2 A:GLU253 3.9 23.4 1.0 OG1 A:THR102 4.0 14.4 1.0 OD2 A:ASP252 4.1 18.0 1.0 O2A A:ADP901 4.2 15.0 1.0 OD1 A:ASP252 4.3 13.8 1.0 O3A A:ADP901 4.3 15.1 1.0 O A:GLY535 4.3 18.4 1.0 CA A:GLY535 4.4 11.9 1.0 NH2 A:ARG131 4.4 14.2 1.0 O A:HOH1118 4.4 16.8 1.0 O A:HOH1122 4.4 17.4 1.0 O3B A:ADP901 4.4 13.8 1.0 PA A:ADP901 4.5 15.5 1.0 O1A A:ADP901 4.5 17.6 1.0 CE A:LYS101 4.5 11.0 1.0 CG A:ASP252 4.6 17.3 1.0 O A:HOH1061 4.8 18.7 1.0 CB A:LYS101 4.8 13.9 1.0 C A:GLY535 4.9 16.1 1.0 CD A:GLU253 4.9 23.9 1.0 N A:THR102 5.0 13.7 1.0

Y.Chen, B.W.Bauer, T.A.Rapoport, J.C.Gumbart. Conformational Changes of the Clamp of the Protein Translocation Atpase Seca. J.Mol.Biol. V. 427 2348 2015.
ISSN: ESSN 1089-8638
PubMed: 25982945
DOI: 10.1016/J.JMB.2015.05.003