Magnesium in PDB 4z3t: Meningococcal Factor H Binding Protein Mutant L130R/G133D

The structure of Meningococcal Factor H Binding Protein Mutant L130R/G133D, PDB code: 4z3t was solved by M.Konar, P.T.Beernink, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	66.03 / 1.62
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	78.549, 35.670, 90.410, 90.00, 104.11, 90.00
R / Rfree (%)	19.4 / 23.1

The binding sites of Magnesium atom in the Meningococcal Factor H Binding Protein Mutant L130R/G133D (pdb code 4z3t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Meningococcal Factor H Binding Protein Mutant L130R/G133D, PDB code: 4z3t:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Meningococcal Factor H Binding Protein Mutant L130R/G133D


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Meningococcal Factor H Binding Protein Mutant L130R/G133D within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:12.4 occ:1.00 O A:HOH553 2.0 10.7 1.0 O A:HOH499 2.0 17.4 1.0 O A:HOH420 2.0 13.7 1.0 O A:HOH589 2.1 15.2 1.0 OD1 A:ASP61 2.2 10.0 1.0 CG A:ASP61 3.1 12.3 1.0 OD2 A:ASP61 3.3 14.6 1.0 CB A:ASP61 4.5 11.3 1.0 O A:HOH574 4.6 17.6 1.0 O A:HOH517 4.7 13.6 1.0 CA A:ASP61 4.9 10.9 1.0

Magnesium binding site 2 out of 2 in the Meningococcal Factor H Binding Protein Mutant L130R/G133D


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Meningococcal Factor H Binding Protein Mutant L130R/G133D within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:28.5 occ:1.00 O A:HOH595 2.0 25.4 1.0 O A:HOH573 2.0 32.9 1.0 O A:HOH452 2.0 29.1 1.0 O B:HOH434 2.1 32.3 1.0 NE2 A:HIS204 2.2 18.3 1.0 O A:HOH586 2.4 34.6 1.0 CE1 A:HIS204 3.2 22.1 1.0 CD2 A:HIS204 3.2 21.6 1.0 O A:HOH419 4.0 30.6 1.0 O A:LYS202 4.3 23.2 1.0 ND1 A:HIS204 4.3 25.1 1.0 CG A:HIS204 4.3 19.2 1.0 O B:GLY52 4.5 25.0 1.0 O A:HOH575 4.6 25.1 1.0 OE2 B:GLU54 4.9 45.8 1.0 CB A:LYS202 4.9 30.8 1.0 O B:HOH428 5.0 27.7 1.0

M.Konar, R.Pajon, P.T.Beernink. A Meningococcal Vaccine Antigen Engineered to Increase Thermal Stability and Stabilize Protective Epitopes. Proc.Natl.Acad.Sci.Usa V. 112 14823 2015.
ISSN: ESSN 1091-6490
PubMed: 26627237
DOI: 10.1073/PNAS.1507829112