Atomistry » Magnesium » PDB 4yoy-4z4f » 4z4b
Atomistry »
  Magnesium »
    PDB 4yoy-4z4f »
      4z4b »

Magnesium in PDB 4z4b: 2-Pyridyl Hoechst - A New Generation Dna-Binding Radioprotector

Protein crystallography data

The structure of 2-Pyridyl Hoechst - A New Generation Dna-Binding Radioprotector, PDB code: 4z4b was solved by J.-Y.Wee, R.C.J.Dobson, J.M.White, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.49 / 1.97
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 24.858, 40.797, 64.538, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 21.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the 2-Pyridyl Hoechst - A New Generation Dna-Binding Radioprotector (pdb code 4z4b). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the 2-Pyridyl Hoechst - A New Generation Dna-Binding Radioprotector, PDB code: 4z4b:

Magnesium binding site 1 out of 1 in 4z4b

Go back to Magnesium Binding Sites List in 4z4b
Magnesium binding site 1 out of 1 in the 2-Pyridyl Hoechst - A New Generation Dna-Binding Radioprotector


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 2-Pyridyl Hoechst - A New Generation Dna-Binding Radioprotector within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg102

b:27.2
occ:1.00
O A:HOH212 2.1 20.7 1.0
O A:HOH214 2.1 27.3 1.0
O B:HOH106 2.1 29.1 1.0
O A:HOH230 4.1 42.5 1.0
H5 A:DC1 4.2 24.9 1.0
O6 B:DG22 4.3 21.4 1.0
N7 A:DG2 4.3 24.2 1.0
O6 A:DG2 4.3 15.9 1.0
O B:HOH109 4.4 28.6 1.0
C5 A:DC1 4.5 24.9 1.0
H42 A:DC3 4.5 22.9 1.0
H6 A:DC1 4.7 25.6 1.0
O B:HOH112 4.7 29.4 1.0
H41 A:DC3 4.7 22.9 1.0
C6 A:DC1 4.7 25.6 1.0
O A:HOH222 4.8 41.6 1.0
N4 A:DC3 4.9 22.9 1.0

Reference:

J.-Y.Wee, R.C.J.Dobson, J.M.White. 2-Pyridyl Hoechst - A New Generation Dna-Binding Radioprotector To Be Published.
Page generated: Sat Sep 28 23:39:18 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy