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Magnesium in PDB 4zca: EG5 Motor Domain Mutant Y231F

Protein crystallography data

The structure of EG5 Motor Domain Mutant Y231F, PDB code: 4zca was solved by M.Luo, C.Parke, D.Worthylake, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 2.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 52.540, 77.830, 93.120, 90.00, 93.90, 90.00
R / Rfree (%) 24.6 / 28.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the EG5 Motor Domain Mutant Y231F (pdb code 4zca). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the EG5 Motor Domain Mutant Y231F, PDB code: 4zca:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4zca

Go back to Magnesium Binding Sites List in 4zca
Magnesium binding site 1 out of 2 in the EG5 Motor Domain Mutant Y231F


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of EG5 Motor Domain Mutant Y231F within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg602

b:18.8
occ:1.00
O A:HOH743 2.1 10.9 1.0
O A:HOH705 2.2 44.1 1.0
OG1 A:THR112 2.4 33.4 1.0
O A:HOH712 2.4 29.4 1.0
O2B A:ADP601 2.4 18.2 1.0
O A:HOH702 2.5 13.0 1.0
PB A:ADP601 3.4 18.7 1.0
O1B A:ADP601 3.4 18.1 1.0
CB A:THR112 3.5 33.1 1.0
O A:HOH757 3.7 13.5 1.0
O A:HOH716 3.8 18.5 1.0
OD2 A:ASP265 4.1 20.5 1.0
N A:THR112 4.1 21.1 1.0
O1A A:ADP601 4.2 17.6 1.0
OD1 A:ASP265 4.2 21.1 1.0
O3B A:ADP601 4.3 14.6 1.0
O A:HOH764 4.3 22.2 1.0
O A:HOH726 4.3 13.1 1.0
CA A:THR112 4.4 21.8 1.0
CG A:ASP265 4.5 20.9 1.0
OG A:SER232 4.5 30.0 1.0
CG2 A:THR112 4.6 33.2 1.0
O3A A:ADP601 4.6 18.8 1.0
O A:HOH707 4.6 20.6 1.0
PA A:ADP601 4.8 21.3 1.0
O A:SER232 4.8 25.0 1.0
CB A:LYS111 4.9 11.4 1.0
CE A:LYS111 5.0 12.4 1.0

Magnesium binding site 2 out of 2 in 4zca

Go back to Magnesium Binding Sites List in 4zca
Magnesium binding site 2 out of 2 in the EG5 Motor Domain Mutant Y231F


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of EG5 Motor Domain Mutant Y231F within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg602

b:18.9
occ:1.00
OG1 B:THR112 2.3 15.5 1.0
O B:HOH724 2.3 10.0 1.0
O1B B:ADP601 2.4 24.4 1.0
O B:HOH756 2.4 14.3 1.0
O B:HOH704 2.4 9.2 1.0
O B:HOH702 2.6 8.3 1.0
O3B B:ADP601 2.9 24.2 1.0
CB B:THR112 3.0 15.8 1.0
PB B:ADP601 3.2 24.8 1.0
N B:THR112 3.7 13.3 1.0
O2A B:ADP601 3.8 23.7 1.0
CA B:THR112 3.9 14.0 1.0
OD2 B:ASP265 4.2 13.5 1.0
CG2 B:THR112 4.2 15.4 1.0
OD1 B:ASP265 4.2 13.5 1.0
O3A B:ADP601 4.2 25.0 1.0
PA B:ADP601 4.2 27.5 1.0
O1A B:ADP601 4.3 30.3 1.0
O2B B:ADP601 4.3 20.7 1.0
O A:HOH719 4.4 9.8 1.0
O B:HOH729 4.4 19.8 1.0
O B:HOH769 4.6 15.1 1.0
CG B:ASP265 4.7 12.8 1.0
CB B:LYS111 4.7 11.1 1.0
C B:LYS111 4.8 9.6 1.0

Reference:

J.Richard, E.Kim, M.Luo, E.Wojcik, D.Worthylake, S.Kim. EG5 To Be Published.
Page generated: Sat Sep 28 23:57:39 2024

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