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Magnesium in PDB 4ziy: Structure of Udp-N-Acetylmuramoylalanyl-D-Glutamyl-2,6- Diaminopimelate--D-Alanyl-D-Alanyl Ligase From Acinetobacter Baumannii

Enzymatic activity of Structure of Udp-N-Acetylmuramoylalanyl-D-Glutamyl-2,6- Diaminopimelate--D-Alanyl-D-Alanyl Ligase From Acinetobacter Baumannii

All present enzymatic activity of Structure of Udp-N-Acetylmuramoylalanyl-D-Glutamyl-2,6- Diaminopimelate--D-Alanyl-D-Alanyl Ligase From Acinetobacter Baumannii:
6.3.2.10;

Protein crystallography data

The structure of Structure of Udp-N-Acetylmuramoylalanyl-D-Glutamyl-2,6- Diaminopimelate--D-Alanyl-D-Alanyl Ligase From Acinetobacter Baumannii, PDB code: 4ziy was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.68 / 1.85
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 86.090, 86.090, 131.010, 90.00, 90.00, 120.00
R / Rfree (%) 17.3 / 20.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Udp-N-Acetylmuramoylalanyl-D-Glutamyl-2,6- Diaminopimelate--D-Alanyl-D-Alanyl Ligase From Acinetobacter Baumannii (pdb code 4ziy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Udp-N-Acetylmuramoylalanyl-D-Glutamyl-2,6- Diaminopimelate--D-Alanyl-D-Alanyl Ligase From Acinetobacter Baumannii, PDB code: 4ziy:

Magnesium binding site 1 out of 1 in 4ziy

Go back to Magnesium Binding Sites List in 4ziy
Magnesium binding site 1 out of 1 in the Structure of Udp-N-Acetylmuramoylalanyl-D-Glutamyl-2,6- Diaminopimelate--D-Alanyl-D-Alanyl Ligase From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Udp-N-Acetylmuramoylalanyl-D-Glutamyl-2,6- Diaminopimelate--D-Alanyl-D-Alanyl Ligase From Acinetobacter Baumannii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:33.1
occ:0.74
 O2G A:ANP501 2.0 52.7 0.8
OE2 A:GLU172 2.2 33.3 1.0
O1B A:ANP501 2.2 32.6 0.8
O A:HOH818 2.3 47.2 1.0
OG1 A:THR126 2.4 41.8 1.0
CD A:GLU172 3.1 36.5 1.0
PG A:ANP501 3.3 50.7 0.8
PB A:ANP501 3.4 30.8 0.8
OE1 A:GLU172 3.4 35.0 1.0
N3B A:ANP501 3.6 38.4 0.8
CB A:THR126 3.6 35.3 1.0
N A:THR126 4.0 24.5 1.0
ND2 A:ASN150 4.2 33.5 1.0
CE A:LYS125 4.2 27.9 1.0
CA A:THR126 4.3 29.5 1.0
O1G A:ANP501 4.3 45.1 0.8
O3G A:ANP501 4.3 52.9 0.8
O2B A:ANP501 4.3 22.0 0.8
CB A:LYS125 4.4 27.3 1.0
NH2 A:ARG327 4.4 52.0 1.0
O A:HOH611 4.4 48.3 1.0
CG A:GLU172 4.5 24.3 1.0
OH A:TYR343 4.5 55.9 1.0
O2A A:ANP501 4.5 32.4 0.8
O3A A:ANP501 4.5 28.2 0.8
NZ A:LYS125 4.7 30.8 1.0
CG2 A:THR126 4.8 36.2 1.0
C A:LYS125 4.9 25.2 1.0
O A:GLY147 5.0 36.0 1.0

Reference:

Seattle Structural Genomics Center For Infectious Disease(Ssgcid), J.Abendroth, M.C.Clifton, D.D.Lorimer, T.E.Edwards. Structure of Udp-N-Acetylmuramoylalanyl-D-Glutamyl-2, 6-Diaminopimelate--D-Alanyl-D-Alanyl Ligase From Acinetobacter Baumannii To Be Published.
Page generated: Sun Sep 29 00:03:03 2024

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