Atomistry » Magnesium » PDB 4zi2-4zol » 4zo6
Atomistry »
  Magnesium »
    PDB 4zi2-4zol »
      4zo6 »

Magnesium in PDB 4zo6: Crystal Structure of Mutant (D270A) Beta-Glucosidase From Listeria Innocua in Complex with Cellobiose

Protein crystallography data

The structure of Crystal Structure of Mutant (D270A) Beta-Glucosidase From Listeria Innocua in Complex with Cellobiose, PDB code: 4zo6 was solved by M.Nakajima, R.Yoshida, A.Miyanaga, K.Abe, Y.Takahashi, N.Sugimoto, H.Toyoizumi, H.Nakai, M.Kitaoka, H.Taguchi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.56 / 2.00
Space group I 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 89.790, 95.350, 215.376, 90.00, 96.30, 90.00
R / Rfree (%) 18.3 / 25.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Mutant (D270A) Beta-Glucosidase From Listeria Innocua in Complex with Cellobiose (pdb code 4zo6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Mutant (D270A) Beta-Glucosidase From Listeria Innocua in Complex with Cellobiose, PDB code: 4zo6:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4zo6

Go back to Magnesium Binding Sites List in 4zo6
Magnesium binding site 1 out of 2 in the Crystal Structure of Mutant (D270A) Beta-Glucosidase From Listeria Innocua in Complex with Cellobiose


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Mutant (D270A) Beta-Glucosidase From Listeria Innocua in Complex with Cellobiose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg805

b:15.9
occ:1.00
O A:HOH1196 1.9 14.8 1.0
OD1 A:ASP648 2.0 14.4 1.0
O A:HOH1134 2.0 19.2 1.0
O A:HOH968 2.2 9.6 1.0
O A:THR650 2.2 11.5 1.0
O A:HOH1076 2.3 16.4 1.0
CG A:ASP648 3.1 13.9 1.0
C A:THR650 3.4 11.8 1.0
OD2 A:ASP648 3.4 13.5 1.0
N A:THR650 4.0 11.0 1.0
O A:PRO698 4.2 12.3 1.0
N A:ALA651 4.2 14.0 1.0
CA A:ALA651 4.2 12.7 1.0
O A:HOH1185 4.2 18.2 1.0
CA A:THR650 4.3 12.4 1.0
CB A:ALA651 4.3 11.9 1.0
O A:LEU700 4.3 10.4 1.0
NE2 A:HIS701 4.3 10.9 1.0
CB A:ASP648 4.4 12.7 1.0
CA A:GLY699 4.4 14.2 1.0
O A:GLU697 4.4 12.8 1.0
OE1 A:GLU697 4.6 12.7 1.0
N A:LEU700 4.6 12.7 1.0
N A:VAL649 4.6 12.6 1.0
C A:GLY699 4.7 13.3 1.0
CB A:GLU697 4.7 15.9 1.0
C A:PRO698 4.7 13.0 1.0
C A:ASP648 4.7 14.3 1.0
O A:HOH1080 4.7 11.9 1.0
CA A:ASP648 4.8 13.2 1.0
CE1 A:HIS701 4.8 11.1 1.0
CB A:THR650 4.8 12.5 1.0
N A:GLY699 4.8 12.3 1.0
CD2 A:HIS701 4.9 10.4 1.0

Magnesium binding site 2 out of 2 in 4zo6

Go back to Magnesium Binding Sites List in 4zo6
Magnesium binding site 2 out of 2 in the Crystal Structure of Mutant (D270A) Beta-Glucosidase From Listeria Innocua in Complex with Cellobiose


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Mutant (D270A) Beta-Glucosidase From Listeria Innocua in Complex with Cellobiose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg802

b:15.1
occ:1.00
OD1 B:ASP648 1.9 12.2 1.0
O B:HOH1220 2.1 10.4 1.0
O B:THR650 2.2 16.1 1.0
O B:HOH934 2.2 19.5 1.0
O B:HOH949 2.2 11.1 1.0
O B:HOH970 2.2 11.7 1.0
CG B:ASP648 2.9 11.8 1.0
OD2 B:ASP648 3.2 16.2 1.0
C B:THR650 3.3 13.8 1.0
N B:THR650 3.9 11.3 1.0
CB B:ALA651 4.2 9.3 1.0
CA B:THR650 4.2 12.4 1.0
O B:LEU700 4.2 12.0 1.0
CA B:ALA651 4.2 11.1 1.0
O B:PRO698 4.2 13.0 1.0
N B:ALA651 4.3 12.0 1.0
O B:HOH940 4.3 23.3 1.0
CB B:ASP648 4.3 12.1 1.0
O B:HOH1203 4.3 14.8 1.0
NE2 B:HIS701 4.3 13.1 1.0
O B:GLU697 4.5 15.0 1.0
CA B:GLY699 4.6 15.4 1.0
OE1 B:GLU697 4.6 14.5 1.0
N B:VAL649 4.6 13.3 1.0
C B:ASP648 4.6 13.3 1.0
CA B:ASP648 4.6 11.7 1.0
N B:LEU700 4.7 12.6 1.0
CB B:THR650 4.7 12.5 1.0
C B:GLY699 4.7 15.2 1.0
CD2 B:HIS701 4.8 11.5 1.0
C B:PRO698 4.8 16.2 1.0
O B:HOH974 4.8 12.4 1.0
CE1 B:HIS701 4.9 13.9 1.0
N B:GLY699 4.9 14.7 1.0
CB B:GLU697 4.9 16.2 1.0

Reference:

M.Nakajima, R.Yoshida, A.Miyanaga, K.Abe, Y.Takahashi, N.Sugimoto, H.Toyoizumi, H.Nakai, M.Kitaoka, H.Taguchi. Functional and Structural Analysis of A Beta-Glucosidase Involved in Beta-1,2-Glucan Metabolism in Listeria Innocua Plos One V. 11 48870 2016.
ISSN: ESSN 1932-6203
PubMed: 26886583
DOI: 10.1371/JOURNAL.PONE.0148870
Page generated: Sun Sep 29 00:05:31 2024

Last articles

Mg in 7WX3
Mg in 7WUX
Mg in 7WID
Mg in 7WUW
Mg in 7WYG
Mg in 7WJ4
Mg in 7WRX
Mg in 7WUA
Mg in 7WRG
Mg in 7WKL
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy