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Magnesium in PDB 4zqf: Crystal Structure of Dox-P Reductoisomerase Fosmidomycin and Magnesium

Enzymatic activity of Crystal Structure of Dox-P Reductoisomerase Fosmidomycin and Magnesium

All present enzymatic activity of Crystal Structure of Dox-P Reductoisomerase Fosmidomycin and Magnesium:
1.1.1.267;

Protein crystallography data

The structure of Crystal Structure of Dox-P Reductoisomerase Fosmidomycin and Magnesium, PDB code: 4zqf was solved by R.W.Birkinshaw, R.L.Brady, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 64.91 / 2.20
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 66.550, 66.550, 389.479, 90.00, 90.00, 120.00
R / Rfree (%) 22.4 / 26.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Dox-P Reductoisomerase Fosmidomycin and Magnesium (pdb code 4zqf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Dox-P Reductoisomerase Fosmidomycin and Magnesium, PDB code: 4zqf:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 4zqf

Go back to Magnesium Binding Sites List in 4zqf
Magnesium binding site 1 out of 2 in the Crystal Structure of Dox-P Reductoisomerase Fosmidomycin and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Dox-P Reductoisomerase Fosmidomycin and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:40.0
occ:1.00
OE2 A:GLU155 2.2 45.5 1.0
O1 A:FOM602 2.2 51.0 1.0
O2 A:FOM602 2.2 58.1 1.0
OE2 A:GLU234 2.2 44.5 1.0
OD2 A:ASP153 2.2 52.9 1.0
OD1 A:ASP153 2.2 50.0 1.0
CG A:ASP153 2.5 46.9 1.0
N1 A:FOM602 2.7 65.2 1.0
C1 A:FOM602 2.7 57.3 1.0
CD A:GLU155 3.1 43.5 1.0
CD A:GLU234 3.2 42.1 1.0
OE1 A:GLU155 3.4 46.6 1.0
OE1 A:GLU234 3.7 45.0 1.0
NZ A:LYS128 3.9 49.3 1.0
C2 A:FOM602 4.0 63.2 1.0
C3 A:FOM602 4.0 59.0 1.0
CB A:ASP153 4.1 42.1 1.0
ND2 A:ASN230 4.1 42.5 1.0
CG A:GLU234 4.3 38.7 1.0
N A:SER154 4.4 44.1 1.0
CG A:GLU155 4.4 41.3 1.0
O A:HOH724 4.5 48.3 1.0
CE A:LYS128 4.5 46.5 1.0
N A:GLU155 4.6 37.0 1.0
NZ A:LYS231 4.7 44.3 1.0
CB A:GLU155 4.8 41.4 1.0
CA A:ASP153 4.9 41.1 1.0
CB A:SER154 4.9 44.0 1.0
C A:ASP153 4.9 44.2 1.0
OD1 A:ASN230 4.9 49.4 1.0
CG A:ASN230 5.0 44.0 1.0

Magnesium binding site 2 out of 2 in 4zqf

Go back to Magnesium Binding Sites List in 4zqf
Magnesium binding site 2 out of 2 in the Crystal Structure of Dox-P Reductoisomerase Fosmidomycin and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Dox-P Reductoisomerase Fosmidomycin and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:36.0
occ:1.00
O2 B:FOM602 1.8 61.9 1.0
OE2 B:GLU155 2.1 42.7 1.0
OD2 B:ASP153 2.2 49.0 1.0
OD1 B:ASP153 2.2 48.5 1.0
OE2 B:GLU234 2.2 41.2 1.0
O1 B:FOM602 2.2 52.1 1.0
CG B:ASP153 2.5 45.1 1.0
N1 B:FOM602 2.6 66.7 1.0
C1 B:FOM602 2.8 57.0 1.0
CD B:GLU155 3.1 41.9 1.0
CD B:GLU234 3.2 40.3 1.0
OE1 B:GLU155 3.4 44.3 1.0
OE1 B:GLU234 3.7 42.1 1.0
NZ B:LYS128 3.9 50.0 1.0
C2 B:FOM602 3.9 65.3 1.0
CB B:ASP153 4.1 42.0 1.0
C3 B:FOM602 4.1 58.1 1.0
ND2 B:ASN230 4.2 42.3 1.0
CG B:GLU234 4.3 36.8 1.0
N B:SER154 4.4 42.4 1.0
CG B:GLU155 4.4 39.6 1.0
N B:GLU155 4.5 36.9 1.0
CE B:LYS128 4.5 45.7 1.0
CB B:GLU155 4.7 40.1 1.0
NZ B:LYS231 4.7 42.2 1.0
CA B:ASP153 4.8 41.0 1.0
CB B:SER154 4.8 43.5 1.0
C B:ASP153 4.9 42.0 1.0
OD1 B:ASN230 5.0 45.5 1.0

Reference:

R.W.Birkinshaw, R.L.Brady. Crystal Structures of the Moraxella Catarrhalis Dox-P Reductoisomerase To Be Published.
Page generated: Mon Dec 14 19:58:12 2020

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