Magnesium in PDB 4zr8: Structure of Uroporphyrinogen Decarboxylase From Acinetobacter Baumannii

Enzymatic activity of Structure of Uroporphyrinogen Decarboxylase From Acinetobacter Baumannii

All present enzymatic activity of Structure of Uroporphyrinogen Decarboxylase From Acinetobacter Baumannii:
4.1.1.37;

Protein crystallography data

The structure of Structure of Uroporphyrinogen Decarboxylase From Acinetobacter Baumannii, PDB code: 4zr8 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	28.81 / 1.50
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	65.540, 83.380, 68.460, 90.00, 106.97, 90.00
*R / R_free (%)*	12.9 / 16.1

Other elements in 4zr8:

The structure of Structure of Uroporphyrinogen Decarboxylase From Acinetobacter Baumannii also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Uroporphyrinogen Decarboxylase From Acinetobacter Baumannii (pdb code 4zr8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Uroporphyrinogen Decarboxylase From Acinetobacter Baumannii, PDB code: 4zr8:

Magnesium binding site 1 out of 1 in 4zr8

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Magnesium Binding Sites List in 4zr8

Magnesium binding site 1 out of 1 in the Structure of Uroporphyrinogen Decarboxylase From Acinetobacter Baumannii

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Uroporphyrinogen Decarboxylase From Acinetobacter Baumannii within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg401 b:29.0 occ:1.00	O	A:HOH851	2.1	34.3	1.0
	O	A:HOH642	2.1	20.6	1.0
	O	A:HOH514	2.2	24.4	1.0
	O	A:HOH528	2.3	30.3	1.0
	ND1	A:HIS184	3.9	19.8	1.0
	O	A:HOH576	4.1	20.4	1.0
	O	A:ALA110	4.2	24.3	1.0
	CE1	A:HIS184	4.3	20.4	1.0
	O	A:HOH883	4.4	44.4	1.0
	O	A:LEU112	4.5	18.9	1.0
	O	A:HOH555	4.5	25.1	1.0
	O	A:HOH879	4.5	43.5	1.0
	O	A:VAL109	4.6	21.1	1.0
	CA	A:ALA110	4.7	22.7	1.0
	C	A:ALA110	4.8	22.9	1.0

Reference:

J.Abendroth, J.W.Fairman, D.D.Lorimer, T.E.Edwards. Structure of Uroporphyrinogen Decarboxylase From Acinetobacter Baumannii To Be Published.

Page generated: Mon Dec 14 19:58:20 2020

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