Magnesium in PDB 4zu9: Crystal Structure of Bacterial Selenocysteine-Specific Elongation Factor Ef-Sec

The structure of Crystal Structure of Bacterial Selenocysteine-Specific Elongation Factor Ef-Sec, PDB code: 4zu9 was solved by Y.Itoh, S.Sekine, S.Yokoyama, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.39 / 3.19
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	114.240, 114.240, 204.632, 90.00, 90.00, 90.00
R / Rfree (%)	20.7 / 26.1

The binding sites of Magnesium atom in the Crystal Structure of Bacterial Selenocysteine-Specific Elongation Factor Ef-Sec (pdb code 4zu9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Bacterial Selenocysteine-Specific Elongation Factor Ef-Sec, PDB code: 4zu9:

Magnesium binding site 1 out of 1 in the Crystal Structure of Bacterial Selenocysteine-Specific Elongation Factor Ef-Sec


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Bacterial Selenocysteine-Specific Elongation Factor Ef-Sec within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2002 b:84.8 occ:1.00 O2B A:GNP2001 2.0 0.8 1.0 O1G A:GNP2001 2.1 0.8 1.0 OG1 A:THR17 2.2 0.1 1.0 CB A:SER40 2.6 0.2 1.0 OG A:SER40 2.7 0.9 1.0 PB A:GNP2001 3.0 0.9 1.0 N3B A:GNP2001 3.1 65.9 1.0 PG A:GNP2001 3.1 0.5 1.0 N A:SER40 3.5 0.5 1.0 CB A:THR17 3.6 0.5 1.0 CA A:SER40 3.6 0.0 1.0 O1B A:GNP2001 3.8 0.6 1.0 OD2 A:ASP61 3.9 0.5 1.0 O2G A:GNP2001 4.0 0.0 1.0 O A:VAL62 4.0 0.8 1.0 O2A A:GNP2001 4.1 0.9 1.0 O3A A:GNP2001 4.2 0.4 1.0 N A:THR17 4.2 0.4 1.0 O3G A:GNP2001 4.3 0.1 1.0 CG2 A:THR17 4.4 0.9 1.0 CA A:THR17 4.5 0.7 1.0 OD1 A:ASP61 4.5 0.3 1.0 PA A:GNP2001 4.6 0.8 1.0 C A:SER40 4.6 0.0 1.0 CG A:ASP61 4.6 0.8 1.0 CB A:LYS16 4.6 92.3 1.0 C A:LEU39 4.6 0.3 1.0 CE A:LYS16 4.7 0.7 1.0 O A:SER40 4.7 0.4 1.0 CA A:PRO63 4.8 0.6 1.0 O1A A:GNP2001 4.9 0.9 1.0

Y.Itoh, S.Sekine, S.Yokoyama. Crystal Structure of the Full-Length Bacterial Selenocysteine-Specific Elongation Factor Selb Nucleic Acids Res. V. 43 9028 2015.
ISSN: ESSN 1362-4962
PubMed: 26304550
DOI: 10.1093/NAR/GKV833