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Magnesium in PDB 4zx4: X-Ray Crystal Structure of Pfa-M1 in Complex with Hydroxamic Acid- Based Inhibitor 10O

Protein crystallography data

The structure of X-Ray Crystal Structure of Pfa-M1 in Complex with Hydroxamic Acid- Based Inhibitor 10O, PDB code: 4zx4 was solved by N.Drinkwater, S.Mcgowan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.04 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 75.150, 109.190, 118.830, 90.00, 90.00, 90.00
R / Rfree (%) 15.8 / 19.7

Other elements in 4zx4:

The structure of X-Ray Crystal Structure of Pfa-M1 in Complex with Hydroxamic Acid- Based Inhibitor 10O also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the X-Ray Crystal Structure of Pfa-M1 in Complex with Hydroxamic Acid- Based Inhibitor 10O (pdb code 4zx4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the X-Ray Crystal Structure of Pfa-M1 in Complex with Hydroxamic Acid- Based Inhibitor 10O, PDB code: 4zx4:

Magnesium binding site 1 out of 1 in 4zx4

Go back to Magnesium Binding Sites List in 4zx4
Magnesium binding site 1 out of 1 in the X-Ray Crystal Structure of Pfa-M1 in Complex with Hydroxamic Acid- Based Inhibitor 10O


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Crystal Structure of Pfa-M1 in Complex with Hydroxamic Acid- Based Inhibitor 10O within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1103

b:45.0
occ:1.00
O A:HOH1331 2.1 29.9 1.0
O A:HOH1502 2.2 29.5 1.0
O A:HOH1423 2.2 27.4 1.0
O A:HOH2012 2.3 34.8 1.0
O A:HOH2122 2.3 32.0 1.0
OE2 A:GLU957 3.8 22.2 1.0
O A:HOH2110 4.0 22.7 1.0
O A:HOH1958 4.1 33.3 1.0
ND2 A:ASN992 4.1 21.2 1.0
OD2 A:ASP995 4.2 16.3 1.0
O A:HOH1407 4.2 30.6 1.0
O A:HOH2002 4.3 37.0 1.0
O A:HOH1939 4.3 34.6 1.0
O A:HOH1532 4.5 18.1 1.0
CD A:GLU957 4.5 22.7 1.0
CG A:GLU957 4.7 24.4 1.0
O A:HOH1486 4.8 27.3 1.0

Reference:

N.Drinkwater, N.B.Vinh, S.N.Mistry, R.S.Bamert, C.Ruggeri, J.P.Holleran, S.Loganathan, A.Paiardini, S.A.Charman, A.K.Powell, V.M.Avery, S.Mcgowan, P.J.Scammells. Potent Dual Inhibitors of Plasmodium Falciparum M1 and M17 Aminopeptidases Through Optimization of S1 Pocket Interactions. Eur.J.Med.Chem. V. 110 43 2016.
ISSN: ISSN 0223-5234
PubMed: 26807544
DOI: 10.1016/J.EJMECH.2016.01.015
Page generated: Sun Sep 29 00:12:09 2024

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