Atomistry » Magnesium » PDB 5a28-5aby » 5a2w
Atomistry »
  Magnesium »
    PDB 5a28-5aby »
      5a2w »

Magnesium in PDB 5a2w: Crystal Structure of Mtpap in Complex with Atpgammas

Protein crystallography data

The structure of Crystal Structure of Mtpap in Complex with Atpgammas, PDB code: 5a2w was solved by M.Lapkouski, B.M.Hallberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.07 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 61.636, 96.696, 192.377, 90.00, 90.00, 90.00
R / Rfree (%) 22.6 / 25.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Mtpap in Complex with Atpgammas (pdb code 5a2w). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Mtpap in Complex with Atpgammas, PDB code: 5a2w:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 5a2w

Go back to Magnesium Binding Sites List in 5a2w
Magnesium binding site 1 out of 2 in the Crystal Structure of Mtpap in Complex with Atpgammas


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Mtpap in Complex with Atpgammas within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1530

b:65.9
occ:1.00
O1A A:AGS1529 1.7 65.4 1.0
O2G A:AGS1529 1.7 67.5 1.0
O2B A:AGS1529 1.9 61.6 1.0
O A:HOH2010 2.0 52.9 1.0
O A:HOH2013 2.1 30.0 1.0
OD2 A:ASP239 2.2 64.3 1.0
PA A:AGS1529 3.0 66.3 1.0
PB A:AGS1529 3.0 65.2 1.0
PG A:AGS1529 3.2 64.9 1.0
CG A:ASP239 3.2 63.9 1.0
O3A A:AGS1529 3.4 65.5 1.0
OD1 A:ASP239 3.5 64.6 1.0
O3B A:AGS1529 3.6 63.0 1.0
C5' A:AGS1529 3.7 69.2 1.0
O5' A:AGS1529 3.8 65.9 1.0
OG A:SER226 3.9 60.2 1.0
O3G A:AGS1529 4.0 58.9 1.0
O A:HOH2009 4.0 30.0 1.0
O2A A:AGS1529 4.2 66.0 1.0
O1B A:AGS1529 4.3 59.6 1.0
O A:ASP237 4.5 65.7 1.0
N A:SER226 4.5 54.7 1.0
CB A:ASP239 4.5 62.0 1.0
S1G A:AGS1529 4.6 63.2 1.0
CB A:SER226 4.7 56.0 1.0

Magnesium binding site 2 out of 2 in 5a2w

Go back to Magnesium Binding Sites List in 5a2w
Magnesium binding site 2 out of 2 in the Crystal Structure of Mtpap in Complex with Atpgammas


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Mtpap in Complex with Atpgammas within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1529

b:64.5
occ:1.00
O2B B:AGS1528 2.1 56.5 1.0
OD2 B:ASP239 2.2 70.2 1.0
OD1 B:ASP237 2.3 75.8 1.0
O2G B:AGS1528 2.4 61.0 1.0
O1A B:AGS1528 2.7 61.6 1.0
OG B:SER226 2.9 64.1 1.0
O B:HOH2003 3.1 30.0 1.0
CG B:ASP239 3.3 71.3 1.0
PB B:AGS1528 3.4 58.6 1.0
CG B:ASP237 3.4 68.4 1.0
O B:ASP237 3.5 58.2 1.0
PG B:AGS1528 3.6 60.8 1.0
OD1 B:ASP239 3.7 75.6 1.0
O3B B:AGS1528 3.8 59.4 1.0
N B:SER226 3.9 57.6 1.0
CB B:SER226 3.9 60.0 1.0
OD2 B:ASP237 3.9 73.0 1.0
PA B:AGS1528 4.0 62.6 1.0
O3A B:AGS1528 4.1 62.8 1.0
C B:ASP237 4.3 61.4 1.0
O B:HOH2005 4.3 30.0 1.0
S1G B:AGS1528 4.3 67.9 1.0
CA B:SER226 4.4 59.4 1.0
CB B:ASP239 4.5 68.4 1.0
C5' B:AGS1528 4.5 63.2 1.0
O1B B:AGS1528 4.6 54.2 1.0
N B:ASP237 4.6 59.9 1.0
CB B:ASP237 4.7 64.0 1.0
N B:ASP239 4.7 62.7 1.0
CA B:ASP237 4.8 62.2 1.0
O5' B:AGS1528 4.8 61.7 1.0
C B:GLY225 4.8 57.9 1.0
N B:SER227 4.8 58.3 1.0
O3G B:AGS1528 4.8 61.1 1.0
CA B:GLY225 4.9 55.2 1.0

Reference:

M.Lapkouski, B.M.Hallberg. Structure of Mitochondrial Poly(A) Rna Polymerase Reveals the Structural Basis For Dimerization, Atp Selectivity and the SPAX4 Disease Phenotype. Nucleic Acids Res. V. 43 9065 2015.
ISSN: ISSN 0305-1048
PubMed: 26319014
DOI: 10.1093/NAR/GKV861
Page generated: Mon Dec 14 19:59:08 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy